Starting /dee2/code/volunteer_pipeline.sh ERR1942990 current disk space = 1523629371392 free memory = 1568798388 ERR1942990 SRAfilesize 351b3d93d5dba613eba17846f7a14725 ERR1942990.sra ERR1942990.sra file validated ERR1942990 is single end ERR1942990 is conventional basespace ERR1942990 read1 length is 25-241 nt ##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1942990_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000 Sequences flagged as poor quality 0 Sequence length 25-241 %GC 63 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.6865 26.0 23.0 27.0 20.0 28.0 2 24.47725 26.0 23.0 27.0 19.0 28.0 3 24.2105 26.0 22.0 27.0 19.0 28.0 4 24.35325 26.0 23.0 27.0 18.0 28.0 5 24.21325 26.0 22.0 27.0 18.0 28.0 6 24.835 26.0 23.0 28.0 20.0 29.0 7 24.22325 25.0 22.0 27.0 19.0 28.0 8 24.8935 26.0 23.0 28.0 20.0 29.0 9 24.70125 26.0 23.0 28.0 19.0 29.0 10-14 24.9702 26.2 23.0 28.0 20.0 29.0 15-19 24.8911 26.4 22.8 28.0 19.6 29.0 20-24 24.454199999999997 25.8 22.8 27.8 18.4 29.0 25-29 24.41176338506788 25.8 22.6 27.4 18.4 28.8 30-34 24.43117578788289 25.6 22.6 27.6 18.2 29.0 35-39 24.4103715856147 25.8 22.6 27.6 18.8 29.0 40-44 23.956487170019717 25.2 22.0 27.0 16.0 28.4 45-49 24.068615392995728 25.4 22.0 27.0 17.6 28.4 50-54 24.03325637745742 25.4 22.0 27.0 17.2 28.0 55-59 23.892510279075914 25.0 22.0 27.0 16.4 28.2 60-64 23.83461910618704 25.0 22.0 27.0 16.2 28.0 65-69 23.755806506149916 24.8 21.6 27.0 15.8 28.0 70-74 23.549399283904446 25.0 21.4 27.0 14.8 28.0 75-79 22.848548833221862 24.0 20.4 27.0 14.0 28.0 80-84 22.680162470135286 24.0 20.2 27.0 14.0 28.0 85-89 22.700264221857474 24.0 20.2 27.0 14.0 28.0 90-94 22.80403145048724 24.0 20.2 27.0 14.0 28.0 95-99 22.422768599754388 24.0 20.0 27.0 14.0 28.0 100-104 22.262009513320628 23.2 19.8 26.4 13.8 28.0 105-109 22.101970483473146 23.0 19.8 26.0 14.0 28.0 110-114 22.226224819537467 23.2 19.6 26.6 13.6 28.0 115-119 21.650694916534682 22.6 18.8 25.6 13.2 27.4 120-124 21.921598032561704 23.2 19.4 26.0 13.6 27.4 125-129 21.905606616056808 23.2 19.0 26.2 13.0 28.0 130-134 21.23572970990717 22.6 17.6 26.2 12.2 27.6 135-139 20.693043744025477 22.0 17.4 25.0 12.4 27.0 140-144 20.412511100229036 21.4 16.4 24.8 12.8 26.8 145-149 20.780295673516985 22.0 17.4 24.8 12.8 26.6 150-154 21.13334660770702 22.0 18.6 25.0 13.2 27.0 155-159 20.365836042100714 21.2 16.8 24.4 12.4 26.8 160-164 20.139753689517352 20.8 16.0 24.0 12.4 26.0 165-169 20.231245762574115 21.4 15.6 24.4 12.8 26.6 170-174 20.4726550894496 21.2 18.0 24.4 12.8 26.0 175-179 19.560989990128046 20.6 15.2 23.6 11.6 25.6 180-184 19.239130046791264 20.0 14.2 23.2 11.8 25.2 185-189 19.078556901927282 20.0 14.0 23.4 11.8 25.6 190-194 19.12478971609613 20.0 14.2 23.2 11.8 25.0 195-199 19.48796959151499 20.2 14.2 23.2 12.2 25.2 200-204 18.716063604476556 20.0 14.0 23.0 9.0 25.0 205-209 18.705806628251413 NaN NaN NaN NaN NaN 210-214 18.48845659256789 NaN NaN NaN NaN NaN 215-219 17.27765367143925 NaN NaN NaN NaN NaN 220-224 17.783543123543126 NaN NaN NaN NaN NaN 225-229 16.06 NaN NaN NaN NaN NaN 230-234 17.283333333333335 NaN NaN NaN NaN NaN 235-239 12.7 NaN NaN NaN NaN NaN 240-241 9.0 NaN NaN NaN NaN NaN >>END_MODULE >>Per sequence quality scores warn #Quality Count 14 1.0 15 2.0 16 10.0 17 43.0 18 90.0 19 218.0 20 288.0 21 390.0 22 394.0 23 511.0 24 633.0 25 650.0 26 600.0 27 169.0 28 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.625 42.675000000000004 15.6 21.099999999999998 2 35.975 33.300000000000004 4.55 26.174999999999997 3 35.675000000000004 17.974999999999998 10.025 36.325 4 29.95 31.724999999999998 17.724999999999998 20.599999999999998 5 19.45 26.900000000000002 18.075 35.575 6 30.675 23.625 8.75 36.95 7 25.0 33.650000000000006 15.55 25.8 8 21.875 21.4 10.549999999999999 46.175 9 16.425 24.15 12.875 46.550000000000004 10-14 25.564999999999998 18.675 16.195 39.565 15-19 33.129999999999995 18.925 13.614999999999998 34.33 20-24 31.365 17.115 17.294999999999998 34.225 25-29 27.446264842928002 21.278621173405483 14.72017636154116 36.55493762212536 30-34 29.999496145513177 18.96004433919484 15.8159923414118 35.22446717388018 35-39 31.42987665600731 18.567585401756258 15.501751180143138 34.50078676209329 40-44 29.602999332340403 24.749627651378976 14.519028298495199 31.12834471778542 45-49 25.9249568266262 21.43492595112251 14.96153644879376 37.67858077345753 50-54 27.42093784078517 20.845147219193024 17.977099236641223 33.75681570338059 55-59 25.855855855855857 22.49436936936937 16.199324324324323 35.45045045045045 60-64 24.726871222687123 25.650860065086007 17.54416550441655 32.07810320781032 65-69 32.22532814778804 15.757170636849782 16.70515313563442 35.312348079727755 70-74 29.059550927432475 19.518385942076147 19.90888382687927 31.513179303612105 75-79 24.61130865230426 21.78065955518371 17.792651467614863 35.81538032489716 80-84 31.8076260394037 18.817888980447975 16.016180987339876 33.35830399280845 85-89 29.799403850801582 21.413034721662775 14.984290663014582 33.803270764521066 90-94 27.36625514403292 21.476337448559672 15.1920438957476 35.96536351165981 95-99 31.266515666289163 14.97734994337486 18.733484333710834 35.022650056625146 100-104 24.740521076043212 17.348019487396737 20.705359034102944 37.2061004024571 105-109 29.14185639229422 16.74255691768827 15.24810274372446 38.86748394629305 110-114 36.793303283966516 14.114616870573085 14.810045074050226 34.282034771410174 115-119 26.29310344827586 25.17241379310345 16.23563218390805 32.298850574712645 120-124 32.15622457282343 21.090317331163547 13.588283157038243 33.16517493897478 125-129 34.52584731256419 17.391304347826086 14.738103389250256 33.34474495035947 130-134 26.879317350670462 14.160910199106056 12.129215765948802 46.83055668427468 135-139 29.774787949692893 20.971044164960514 16.75928634103539 32.4948815443112 140-144 31.71304056319142 21.052631578947366 14.280925243043916 32.95340261481729 145-149 27.64943160982765 18.078474514118078 16.244957829116245 38.027136046938026 150-154 29.03481012658228 21.835443037974684 13.686708860759495 35.44303797468354 155-159 28.79271070615034 17.403189066059223 16.264236902050115 37.53986332574032 160-164 28.137310073157007 17.613956105796287 12.661789532920654 41.586944288126055 165-169 30.09020618556701 19.780927835051546 13.595360824742267 36.53350515463917 170-174 31.02661596958175 19.08745247148289 14.44866920152091 35.437262357414454 175-179 29.08921933085502 12.825278810408921 23.234200743494423 34.85130111524163 180-184 33.44788087056128 13.058419243986256 15.234822451317298 38.258877434135165 185-189 31.323722149410223 15.858453473132371 15.465268676277852 37.352555701179554 190-194 24.098360655737704 25.08196721311475 14.098360655737704 36.721311475409834 195-199 25.97402597402597 18.367346938775512 19.666048237476808 35.99257884972171 200-204 28.11158798283262 17.59656652360515 24.892703862660944 29.399141630901287 205-209 26.47058823529412 20.26143790849673 16.013071895424837 37.254901960784316 210-214 24.200913242009133 18.72146118721461 21.461187214611872 35.61643835616438 215-219 33.08270676691729 15.037593984962406 15.789473684210526 36.09022556390977 220-224 31.147540983606557 19.672131147540984 11.475409836065573 37.704918032786885 225-229 43.47826086956522 13.043478260869565 8.695652173913043 34.78260869565217 230-234 15.789473684210526 42.10526315789473 10.526315789473683 31.57894736842105 235-239 14.285714285714285 28.57142857142857 42.857142857142854 14.285714285714285 240-241 50.0 0.0 0.0 50.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.5 34 3.5 35 8.0 36 7.5 37 3.5 38 3.0 39 3.5 40 5.0 41 4.5 42 4.166666666666667 43 4.333333333333333 44 10.0 45 17.5 46 43.5 47 56.5 48 31.0 49 14.5 50 17.0 51 22.0 52 24.5 53 22.5 54 37.5 55 55.0 56 54.83333333333334 57 53.83333333333334 58 63.5 59 105.0 60 162.0 61 263.5 62 489.3333333333333 63 609.666666666667 64 478.66666666666697 65 497.33333333333337 66 509.49999999999994 67 320.66666666666674 68 203.66666666666666 69 139.5 70 83.0 71 61.5 72 54.0 73 39.5 74 36.5 75 81.5 76 119.0 77 70.0 78 20.0 79 17.0 80 16.5 81 13.0 82 11.0 83 6.0 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0 25-29 0.0 30-34 0.0 35-39 0.0 40-44 0.0 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-104 0.0 105-109 0.0 110-114 0.0 115-119 0.0 120-124 0.0 125-129 0.0 130-134 0.0 135-139 0.0 140-144 0.0 145-149 0.0 150-154 0.0 155-159 0.0 160-164 0.0 165-169 0.0 170-174 0.0 175-179 0.0 180-184 0.0 185-189 0.0 190-194 0.0 195-199 0.0 200-204 0.0 205-209 0.0 210-214 0.0 215-219 0.0 220-224 0.0 225-229 0.0 230-234 0.0 235-239 0.0 240-241 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 25-29 21.0 30-34 28.0 35-39 34.0 40-44 52.0 45-49 88.0 50-54 193.0 55-59 94.0 60-64 113.0 65-69 218.0 70-74 183.0 75-79 256.0 80-84 165.0 85-89 138.0 90-94 201.0 95-99 256.0 100-104 164.0 105-109 191.0 110-114 128.0 115-119 204.0 120-124 82.0 125-129 77.0 130-134 342.0 135-139 154.0 140-144 63.0 145-149 33.0 150-154 59.0 155-159 68.0 160-164 70.0 165-169 33.0 170-174 68.0 175-179 33.0 180-184 30.0 185-189 25.0 190-194 26.0 195-199 8.0 200-204 27.0 205-209 26.0 210-214 16.0 215-219 18.0 220-224 10.0 225-229 1.0 230-234 2.0 235-239 1.0 240-242 1.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.125 #Duplication Level Percentage of deduplicated Percentage of total 1 72.69709543568464 21.9 2 9.04564315352697 5.45 3 2.904564315352697 2.625 4 2.4896265560165975 3.0 5 1.5767634854771784 2.375 6 1.4937759336099585 2.7 7 1.8257261410788383 3.85 8 1.4937759336099585 3.5999999999999996 9 1.0788381742738589 2.9250000000000003 >10 4.647302904564316 27.224999999999998 >50 0.49792531120331945 10.75 >100 0.24896265560165973 13.600000000000001 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGA 219 5.475 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTC 175 4.375 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCAT 150 3.75 No Hit TCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTCAAC 83 2.075 No Hit TGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTC 80 2.0 No Hit ACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGA 69 1.725 No Hit GACACGGATTCCACCGCGTCCCGGGCAGCCGGAGGTGGTGGGGGTGGCGG 69 1.725 No Hit AACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 67 1.675 No Hit ACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGAC 62 1.55 No Hit AGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTC 47 1.175 No Hit AGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGC 42 1.05 No Hit GTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCT 41 1.0250000000000001 No Hit CGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGC 37 0.9249999999999999 No Hit TAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTG 37 0.9249999999999999 No Hit CAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAG 35 0.8750000000000001 No Hit TGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCG 33 0.8250000000000001 No Hit ACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTG 30 0.75 No Hit AGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCTCCACG 30 0.75 No Hit TTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAG 30 0.75 No Hit AAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACAC 29 0.7250000000000001 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCG 29 0.7250000000000001 No Hit AAGCTCTCCACCAGATAGATCACTCTCGCATTTGTCCTCGCTGATAGCTA 29 0.7250000000000001 No Hit TCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAG 25 0.625 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGG 25 0.625 No Hit CACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCG 22 0.5499999999999999 No Hit TCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCA 22 0.5499999999999999 No Hit GGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCC 21 0.525 No Hit GGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCT 21 0.525 No Hit GACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCC 20 0.5 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 20 0.5 No Hit ACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGT 20 0.5 No Hit AGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCA 20 0.5 No Hit GGCACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTT 19 0.475 No Hit AGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAG 18 0.44999999999999996 No Hit GGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCA 17 0.42500000000000004 No Hit CGATTACACCACCAGAATGGAAGCCATGCAGAGATCATTTCTAGTGCTGC 17 0.42500000000000004 No Hit AGGCGTGCTAGCGAAAGCCGGGCAGTTCAGCACGTTCATCCGGCTGCTGC 17 0.42500000000000004 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAG 16 0.4 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAA 16 0.4 No Hit GCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCA 16 0.4 No Hit AGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGG 15 0.375 No Hit GGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAAC 15 0.375 No Hit AGGTCAACATCTCCACGGGGTCGTCAATGCCACCGTCGACAACACGCTCT 14 0.35000000000000003 No Hit CTGGGGCTGGAGTCGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGG 14 0.35000000000000003 No Hit CGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTT 13 0.325 No Hit ACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCC 12 0.3 No Hit ACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGCTGTTCGCGCCC 12 0.3 No Hit AACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGT 12 0.3 No Hit TCGACAACACGCTCTTCACCGGCGACCACTGCTGCCCATGGCCATCGCCGGGAAGAAGGCGGACGCGCCG 12 0.3 No Hit ACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACG 12 0.3 No Hit GACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGT 12 0.3 No Hit GACGCGCCGGCCCCCGCGCCGCTGGGTCCGGCCAAGATGAGCAACCCGCT 12 0.3 No Hit CGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTA 11 0.27499999999999997 No Hit AGGAAGAAAACATCTCATCATCCGTCGGCATCCTCCTATGGAAGCAAATC 11 0.27499999999999997 No Hit CCAGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACA 11 0.27499999999999997 No Hit GCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGT 10 0.25 No Hit AGAGTTTCACGATTACACCACCAGAATGGAAGCCATGCAGAGATCATTTC 10 0.25 No Hit GCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTC 10 0.25 No Hit CCAACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAA 10 0.25 No Hit AGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTT 10 0.25 No Hit CAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGT 10 0.25 No Hit GGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTC 10 0.25 No Hit ACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCG 10 0.25 No Hit GACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACTAGCC 10 0.25 No Hit GCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGC 10 0.25 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACG 9 0.22499999999999998 No Hit CCAGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCT 9 0.22499999999999998 No Hit AGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGC 9 0.22499999999999998 No Hit GGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTCAACCT 9 0.22499999999999998 No Hit GCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCT 9 0.22499999999999998 No Hit AGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATG 9 0.22499999999999998 No Hit TGGGGGTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCC 9 0.22499999999999998 No Hit CGCCGCCGCCGAGCTCCACCTCGCCGTGCACCACTTGGGCCGCCG 9 0.22499999999999998 No Hit ACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTG 9 0.22499999999999998 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCT 9 0.22499999999999998 No Hit TGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAGC 9 0.22499999999999998 No Hit GGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCT 9 0.22499999999999998 No Hit CAAATCGACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTT 9 0.22499999999999998 No Hit ACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTT 8 0.2 No Hit CTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTCAACCAGGTGCTGCT 8 0.2 No Hit AGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACG 8 0.2 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGCGTCGGCGCAGGGCCCAACG 8 0.2 No Hit GGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCTCC 8 0.2 No Hit CCCAAATCGACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTG 8 0.2 No Hit TGACCACCACACACACAAACCCTGCTGCACCCACCACCAATGCTACGTGC 8 0.2 No Hit GGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGG 8 0.2 No Hit ACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCC 8 0.2 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACACACGCTCT 8 0.2 No Hit AACGACTCCAGCCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAG 8 0.2 No Hit AAATCGACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTC 8 0.2 No Hit CCAAATCGACAACCAGCTCAACAGCTCCCAGACG 8 0.2 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCATG 8 0.2 No Hit CTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCA 8 0.2 No Hit GGCCATGGCATTGGCGTCCTGCGTCCTCTGCTGGGGGCTGTGACGTTGCC 8 0.2 No Hit CCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCA 8 0.2 No Hit ACTTAAAATAAGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCC 8 0.2 No Hit ACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTTCCA 7 0.17500000000000002 No Hit TAGATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGATTAC 7 0.17500000000000002 No Hit AGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGC 7 0.17500000000000002 No Hit CCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACG 7 0.17500000000000002 No Hit ACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGAC 7 0.17500000000000002 No Hit TCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCAC 7 0.17500000000000002 No Hit AATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTCAACC 7 0.17500000000000002 No Hit ACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCAT 7 0.17500000000000002 No Hit CAACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAG 7 0.17500000000000002 No Hit CGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCG 7 0.17500000000000002 No Hit AAGAAAAAAGGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGT 7 0.17500000000000002 No Hit ACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGAC 7 0.17500000000000002 No Hit CACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCA 7 0.17500000000000002 No Hit GGGGTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCCTC 7 0.17500000000000002 No Hit TCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGA 7 0.17500000000000002 No Hit AGGAAGGAAGAGAGCGTGGAGAAGCTCGACGACTCTGACGGCGATCATCGG 7 0.17500000000000002 No Hit GCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGC 7 0.17500000000000002 No Hit GAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGC 7 0.17500000000000002 No Hit AATGGAAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGATCACGCGTCGGCGC 7 0.17500000000000002 No Hit GGGTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCCTCT 7 0.17500000000000002 No Hit TCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAAC 7 0.17500000000000002 No Hit GTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCCAAATCGACAACC 7 0.17500000000000002 No Hit CCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGG 6 0.15 No Hit ATAGATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGATTA 6 0.15 No Hit CGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTC 6 0.15 No Hit GCGGTGGCCATGGCATTGGCGTCCTGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTG 6 0.15 No Hit ACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGG 6 0.15 No Hit TCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAGCAACCCGCTCAGGACGCAGGCCG 6 0.15 No Hit CGGTCGCTGCTGACGCGCCTGGCGGCGCTGATGCCGACACGGATTCC 6 0.15 No Hit GTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCCAAATCGACAAC 6 0.15 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACA 6 0.15 No Hit GTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCAG 6 0.15 No Hit AAGAAAAAAGGAGCGTGAGAGCCAAATGAATCGAAAGATTCATGTTTGGTTCGGGAAGAGAT 6 0.15 No Hit CATCTCACTCCAATCTTGTTATAACTAAGCCACAGCTAAGCTCGCAAGCT 6 0.15 No Hit AGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 6 0.15 No Hit ACCGCCACCGGCCAGCAGGTCAACATCTCACACCGTGAGCAACCCGCTCAGGACGCAGGCCGGGAGCAGC 6 0.15 No Hit GACCAGCTCGTGGTCTACCAGGTCAACCAGGTGCTGCTGCCCATGGCCAT 6 0.15 No Hit CTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCAC 6 0.15 No Hit AGAGGAAGCGAAGGGGGAGGCAGGCGCCAGGCGCCAGCTTTACCGAGATG 6 0.15 No Hit TCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTG 6 0.15 No Hit TGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCC 5 0.125 No Hit GCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACA 5 0.125 No Hit ACCGGCAGCCGGAACGACCAAGACGCCAACATAACAGGCGTGCTAGCGAA 5 0.125 No Hit TCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGATTCAGGACGCAGG 5 0.125 No Hit CAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCC 5 0.125 No Hit GCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCA 5 0.125 No Hit GGGTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCCTCTGCTGGGGGCTGTGACGTTGCC 5 0.125 No Hit CCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATC 5 0.125 No Hit GCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGAC 5 0.125 No Hit AGAAGACGCCGGTCGCTGCTGACGCGCCTGGCGGCGCTGATGCCGACACGGATTCCACCGCGTCC 5 0.125 No Hit GGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCCGACAACCAGCTCAA 5 0.125 No Hit TCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGC 5 0.125 No Hit GACGCGCCGGCCCCCGCGCCGCTGGGTCCGGCCAAGAAGACGCCGGCAGAAGAACTCGCTGGTGCAGTT 5 0.125 No Hit CGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCT 5 0.125 No Hit TCGCTGCTGACGCGCCTGGCGGCGCTGATGCCGACACGGATTCCACCGCG 5 0.125 No Hit GACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGA 5 0.125 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCCAAATCGACAA 5 0.125 No Hit ACGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGC 5 0.125 No Hit TCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGC 5 0.125 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-14 0.0 0.0 0.0 0.0 0.0 15-19 0.0 0.0 0.0 0.0 0.0 20-24 0.0 0.0 0.0 0.0 0.0 25-29 0.0 0.0 0.0 0.0 0.0 30-34 0.0 0.0 0.0 0.0 0.0 35-39 0.0 0.0 0.0 0.0 0.0 40-44 0.0 0.0 0.0 0.0 0.0 45-49 0.0 0.0 0.0 0.0 0.0 50-54 0.0 0.0 0.0 0.0 0.0 55-59 0.0 0.0 0.0 0.0 0.0 60-64 0.0 0.0 0.0 0.0 0.0 65-69 0.0 0.0 0.0 0.0 0.0 70-74 0.0 0.0 0.0 0.0 0.0 75-79 0.0 0.0 0.0 0.0 0.0 80-84 0.0 0.0 0.0 0.0 0.0 85-89 0.0 0.0 0.0 0.0 0.0 90-94 0.0 0.0 0.0 0.0 0.0 95-99 0.0 0.0 0.0 0.0 0.0 100-104 0.0 0.0 0.0 0.0 0.0 105-109 0.0 0.0 0.0 0.0 0.0 110-114 0.0 0.0 0.0 0.0 0.0 115-119 0.0 0.0 0.0 0.0 0.0 120-124 0.0 0.0 0.0 0.0 0.0 125-129 0.0 0.0 0.0 0.0 0.0 130-134 0.0 0.0 0.0 0.0 0.0 135-139 0.0 0.0 0.0 0.0 0.0 140-144 0.0 0.0 0.0 0.0 0.0 145-149 0.0 0.0 0.0 0.0 0.0 150-154 0.0 0.0 0.0 0.0 0.0 155-159 0.0 0.0 0.0 0.0 0.0 160-164 0.0 0.0 0.0 0.0 0.0 165-169 0.0 0.0 0.0 0.0 0.0 170-174 0.0 0.0 0.0 0.0 0.0 175-179 0.0 0.0 0.0 0.0 0.0 180-184 0.0 0.0 0.0 0.0 0.0 185-189 0.0 0.0 0.0 0.0 0.0 190-194 0.0 0.0 0.0 0.0 0.0 195-199 0.0 0.0 0.0 0.0 0.0 200-204 0.0 0.0 0.0 0.0 0.0 205-209 0.0 0.0 0.0 0.0 0.0 210-214 0.0 0.0 0.0 0.0 0.0 215-219 0.0 0.0 0.0 0.0 0.0 220-224 0.0 0.0 0.0 0.0 0.0 225-229 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACTTCG 5 0.0 7734.0 235 CTCGACT 5 0.002738415 1546.8 230-234 GGCACGG 5 0.002738415 1546.8 215-219 TCGACTT 5 0.002738415 1546.8 230-234 GGCATCA 5 0.002738415 1546.8 220-224 CATCAAC 5 0.002738415 1546.8 225-229 GCACGGC 5 0.002738415 1546.8 220-224 ATCAACT 5 0.002738415 1546.8 225-229 ACGGCAT 5 0.002738415 1546.8 220-224 GCATCAA 5 0.002738415 1546.8 225-229 CGACTTC 5 0.002738415 1546.8 230-234 CACGGCA 5 0.002738415 1546.8 220-224 CGGCATC 10 0.0065716296 966.75 220-224 GCGGCTC 60 3.2674108E-4 107.416664 170-174 GACGCGC 40 9.465601E-6 101.76317 125-129 GGACGCG 40 9.465601E-6 101.76317 125-129 GCTCCGG 45 5.5687746E-4 85.933334 155-159 CTCTGCT 20 0.0017967338 72.506256 7 TCCTCTG 20 0.0017967338 72.506256 5 AACGACT 40 6.173104E-8 72.506256 1 >>END_MODULE Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028423 spots for ERR1942990.sra Written 1028423 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra Read 1028420 spots for ERR1942990.sra Written 1028420 spots for ERR1942990.sra SRR ids: ['ERR1942990.sra'] extra args: ['--split-files', '--defline-qual', '+'] tempdir: /tmp/pfd_y5naoef2 ERR1942990.sra spots: 20568403 blocks: [[1, 1028420], [1028421, 2056840], [2056841, 3085260], [3085261, 4113680], [4113681, 5142100], [5142101, 6170520], [6170521, 7198940], [7198941, 8227360], [8227361, 9255780], [9255781, 10284200], [10284201, 11312620], [11312621, 12341040], [12341041, 13369460], [13369461, 14397880], [14397881, 15426300], [15426301, 16454720], [16454721, 17483140], [17483141, 18511560], [18511561, 19539980], [19539981, 20568403]] ERR1942990 file size 5442480 ERR1942990 completed basic pipeline successfully skewer v0.2.2 [April 4, 2016] COMMAND LINE: skewer -f sanger -l 18 -q 10 -k inf -t 20 -o ERR1942990 ERR1942990_1.fastq Input file: ERR1942990_1.fastq trimmed: ERR1942990-trimmed.fastq Parameters used: -- 3' end adapter sequence (-x): AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -- maximum error ratio allowed (-r): 0.100 -- maximum indel error ratio allowed (-d): 0.030 -- end quality threshold (-q): 10 -- minimum read length allowed after trimming (-l): 18 -- file format (-f): Sanger/Illumina 1.8+ FASTQ -- minimum overlap length for adapter detection (-k): inf -- number of concurrent threads (-t): 20 Tue Dec 10 00:43:04 2024 >> started Tue Dec 10 00:43:16 2024 >> done (12.069s) 20568403 reads processed; of these: 205 ( 0.00%) short reads filtered out after trimming by size control 48 ( 0.00%) empty reads filtered out after trimming by size control 20568150 (100.00%) reads available; of these: 1007548 ( 4.90%) trimmed reads available after processing 19560602 (95.10%) untrimmed reads available after processing Length distribution of reads after trimming: length count percentage 18 236 0.00% 19 394 0.00% 20 658 0.00% 21 1037 0.01% 22 1393 0.01% 23 1871 0.01% 24 4429 0.02% 25 24439 0.12% 26 24335 0.12% 27 25254 0.12% 28 25753 0.13% 29 26607 0.13% 30 27061 0.13% 31 27630 0.13% 32 28354 0.14% 33 28830 0.14% 34 29031 0.14% 35 29855 0.15% 36 31444 0.15% 37 30941 0.15% 38 32604 0.16% 39 33242 0.16% 40 33674 0.16% 41 35026 0.17% 42 36718 0.18% 43 37245 0.18% 44 38524 0.19% 45 40600 0.20% 46 41987 0.20% 47 43580 0.21% 48 46039 0.22% 49 46962 0.23% 50 49350 0.24% 51 52407 0.25% 52 54279 0.26% 53 57773 0.28% 54 60262 0.29% 55 62376 0.30% 56 65609 0.32% 57 70397 0.34% 58 72501 0.35% 59 75819 0.37% 60 81926 0.40% 61 84381 0.41% 62 89928 0.44% 63 98633 0.48% 64 98147 0.48% 65 97430 0.47% 66 103229 0.50% 67 109812 0.53% 68 112222 0.55% 69 120530 0.59% 70 123074 0.60% 71 126511 0.62% 72 129159 0.63% 73 133135 0.65% 74 141556 0.69% 75 144971 0.70% 76 147362 0.72% 77 153507 0.75% 78 157424 0.77% 79 157134 0.76% 80 165120 0.80% 81 170298 0.83% 82 175563 0.85% 83 175788 0.85% 84 180198 0.88% 85 181988 0.88% 86 187039 0.91% 87 187586 0.91% 88 188037 0.91% 89 190177 0.92% 90 200938 0.98% 91 202712 0.99% 92 201371 0.98% 93 205172 1.00% 94 208980 1.02% 95 219858 1.07% 96 218628 1.06% 97 216513 1.05% 98 222963 1.08% 99 220337 1.07% 100 219351 1.07% 101 221117 1.08% 102 221244 1.08% 103 217298 1.06% 104 214600 1.04% 105 223340 1.09% 106 216005 1.05% 107 217316 1.06% 108 222994 1.08% 109 223914 1.09% 110 223616 1.09% 111 222124 1.08% 112 217018 1.06% 113 204245 0.99% 114 207809 1.01% 115 208708 1.01% 116 205215 1.00% 117 204301 0.99% 118 208286 1.01% 119 201977 0.98% 120 205158 1.00% 121 196624 0.96% 122 193298 0.94% 123 191141 0.93% 124 189977 0.92% 125 187972 0.91% 126 183638 0.89% 127 178150 0.87% 128 177917 0.87% 129 178898 0.87% 130 172127 0.84% 131 168296 0.82% 132 162814 0.79% 133 159513 0.78% 134 159333 0.77% 135 157982 0.77% 136 155586 0.76% 137 154984 0.75% 138 156482 0.76% 139 151010 0.73% 140 153738 0.75% 141 151740 0.74% 142 140066 0.68% 143 135968 0.66% 144 136976 0.67% 145 133938 0.65% 146 132215 0.64% 147 127372 0.62% 148 124669 0.61% 149 119239 0.58% 150 115606 0.56% 151 113157 0.55% 152 111275 0.54% 153 113709 0.55% 154 111928 0.54% 155 105039 0.51% 156 99719 0.48% 157 97904 0.48% 158 93561 0.45% 159 94439 0.46% 160 91153 0.44% 161 89126 0.43% 162 90169 0.44% 163 87725 0.43% 164 84050 0.41% 165 80147 0.39% 166 76346 0.37% 167 74581 0.36% 168 73689 0.36% 169 72218 0.35% 170 70177 0.34% 171 69203 0.34% 172 66710 0.32% 173 64988 0.32% 174 62109 0.30% 175 59137 0.29% 176 57264 0.28% 177 56805 0.28% 178 55600 0.27% 179 53226 0.26% 180 51026 0.25% 181 48957 0.24% 182 46951 0.23% 183 45323 0.22% 184 44363 0.22% 185 42587 0.21% 186 41375 0.20% 187 40609 0.20% 188 37781 0.18% 189 36286 0.18% 190 34588 0.17% 191 33329 0.16% 192 32118 0.16% 193 30624 0.15% 194 29748 0.14% 195 28457 0.14% 196 27245 0.13% 197 26373 0.13% 198 24998 0.12% 199 24278 0.12% 200 23108 0.11% 201 22022 0.11% 202 20983 0.10% 203 19985 0.10% 204 19601 0.10% 205 18963 0.09% 206 18364 0.09% 207 17758 0.09% 208 16604 0.08% 209 15296 0.07% 210 14590 0.07% 211 13907 0.07% 212 13270 0.06% 213 12579 0.06% 214 12073 0.06% 215 11444 0.06% 216 10655 0.05% 217 10134 0.05% 218 9730 0.05% 219 8958 0.04% 220 8338 0.04% 221 8009 0.04% 222 7600 0.04% 223 7004 0.03% 224 6630 0.03% 225 6237 0.03% 226 5887 0.03% 227 5457 0.03% 228 5084 0.02% 229 4819 0.02% 230 4315 0.02% 231 3995 0.02% 232 3818 0.02% 233 3516 0.02% 234 3299 0.02% 235 2977 0.01% 236 2796 0.01% 237 2652 0.01% 238 2324 0.01% 239 2201 0.01% 240 2053 0.01% 241 1829 0.01% 242 1681 0.01% 243 1509 0.01% 244 1407 0.01% 245 1263 0.01% 246 1157 0.01% 247 1072 0.01% 248 929 0.00% 249 861 0.00% 250 732 0.00% 251 676 0.00% 252 555 0.00% 253 525 0.00% 254 490 0.00% 255 416 0.00% 256 367 0.00% 257 329 0.00% 258 313 0.00% 259 224 0.00% 260 201 0.00% 261 193 0.00% 262 175 0.00% 263 153 0.00% 264 137 0.00% 265 126 0.00% 266 93 0.00% 267 111 0.00% 268 75 0.00% 269 81 0.00% 270 57 0.00% 271 49 0.00% 272 38 0.00% 273 40 0.00% 274 29 0.00% 275 27 0.00% 276 23 0.00% 277 21 0.00% 278 30 0.00% 279 16 0.00% 280 17 0.00% 281 12 0.00% 282 14 0.00% 283 14 0.00% 284 14 0.00% 285 5 0.00% 286 9 0.00% 287 2 0.00% 288 6 0.00% 289 3 0.00% 290 7 0.00% 291 3 0.00% 292 4 0.00% 293 3 0.00% 294 1 0.00% 295 5 0.00% 296 2 0.00% 297 2 0.00% 298 1 0.00% 299 3 0.00% 300 4 0.00% 301 0 0.00% 302 1 0.00% 303 1 0.00% 304 2 0.00% 305 3 0.00% 306 1 0.00% 307 1 0.00% 308 1 0.00% 309 0 0.00% 310 3 0.00% 311 2 0.00% 312 1 0.00% 313 0 0.00% 314 1 0.00% 315 1 0.00% 316 0 0.00% 317 1 0.00% 318 0 0.00% 319 1 0.00% 320 0 0.00% 321 1 0.00% 322 0 0.00% 323 0 0.00% 324 1 0.00% 325 2 0.00% 326 0 0.00% 327 0 0.00% 328 0 0.00% 329 0 0.00% 330 0 0.00% 331 0 0.00% 332 0 0.00% 333 0 0.00% 334 0 0.00% 335 0 0.00% 336 0 0.00% 337 1 0.00% 338 0 0.00% 339 0 0.00% 340 0 0.00% 341 0 0.00% 342 0 0.00% 343 0 0.00% 344 0 0.00% 345 0 0.00% 346 0 0.00% 347 1 0.00% 348 2 0.00% 349 0 0.00% 350 0 0.00% 351 0 0.00% 352 1 0.00% 353 0 0.00% 354 1 0.00% 355 0 0.00% 356 2 0.00% 357 0 0.00% 358 0 0.00% 359 0 0.00% 360 0 0.00% 361 0 0.00% 362 0 0.00% 363 0 0.00% 364 0 0.00% 365 1 0.00% 366 0 0.00% 367 1 0.00% 368 2 0.00% 20568150 reads passed initial QC criterion=sequence-density sequence-density=0.75 sequence-density-rank=1 fanout-score=1.83 fanout-score-rank=41 prefix-density=1.30 prefix-fanout=1.1 sequence=GCTGCACCTGCGGCCACTGAAGCAGCAGCCTCTGATGCCTCTACCCGTACTACACTACTAGTAACCCCAGCTTAATTACGCTAACCCACGAGCACACGTGTCTGCTTGATGCGTGCGCACGTGGCGCGGCGTAAGCTATGACAATAAAAAGTGTGCTGTACCTGATGTGTCTGTGTGTCGATCTATGTCTGTCACGTACGTGGTCGTGCAAAAAACCCTGAAAGTTTAATTGGCTGGTTAATTTGTGCATAGGGAAATTAACAGTTGGAAAGGGCGATCGGTCTTGATCCCTCTGTGTTTCCCGTGTAACGGCTACTGATCCAGTGGTTAAGCTTCGGGTTGTATGTGAGTCCGTACGTGTTTGCATGGAATGAAATTTATCGTGTGGTCTTACTATCTA criterion=fanout-score sequence-density=0.01 sequence-density-rank=42 fanout-score=138.10 fanout-score-rank=1 prefix-density=0.16 prefix-fanout=6.1 sequence=GGAGGTGGACAAGATCAAGGCCAAGTTTGCACCCAAGAAGAGCTAGAACGACTTATCGATTTTCAAGTTGAACTGGTTAATTT Started job on | Dec 10 00:43:32 Started mapping on | Dec 10 00:43:32 Finished on | Dec 10 00:44:08 Mapping speed, Million of reads per hour | 2056.81 Number of input reads | 20568150 Average input read length | 113 UNIQUE READS: Uniquely mapped reads number | 17188541 Uniquely mapped reads % | 83.57% Average mapped length | 112.04 Number of splices: Total | 5692760 Number of splices: Annotated (sjdb) | 5167754 Number of splices: GT/AG | 5412278 Number of splices: GC/AG | 72653 Number of splices: AT/AC | 3780 Number of splices: Non-canonical | 204049 Mismatch rate per base, % | 0.41% Deletion rate per base | 0.28% Deletion average length | 1.18 Insertion rate per base | 0.22% Insertion average length | 1.17 MULTI-MAPPING READS: Number of reads mapped to multiple loci | 885594 % of reads mapped to multiple loci | 4.31% Number of reads mapped to too many loci | 573594 % of reads mapped to too many loci | 2.79% UNMAPPED READS: % of reads unmapped: too many mismatches | 0.00% % of reads unmapped: too short | 7.82% % of reads unmapped: other | 1.52% CHIMERIC READS: Number of chimeric reads | 0 % of chimeric reads | 0.00% N_unmapped 2494015 2494015 2494015 N_multimapping 885594 885594 885594 N_noFeature 662176 789611 16708155 N_ambiguous 409384 65148 1743 UnstrandedReadsAssigned:16116981 PositiveStrandReadsAssigned:16333782 NegativeStrandReadsAssigned:478643 Dataset is classified positive stranded MeadianReadLen=113 20thPercentileLength=83 echo kmer=79 ERR1942990 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31 [quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20 [index] k-mer length: 31 [index] number of targets: 52,972 [index] number of k-mers: 66,720,672 [index] number of equivalence classes: 111,837 [quant] running in single-end mode [quant] will process file 1: ERR1942990-trimmed.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 20,568,150 reads, 17,247,917 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,206 rounds 52973 ERR1942990.ke.tsv 35125 ERR1942990.se.tsv 88098 total ==> ERR1942990.ke.tsv <== target_id length eff_length est_counts tpm PNS24245 936 837 0 0 PNS24247 1044 945 23.6779 2.09377 PNS24249 1928 1829 69.4807 3.17444 PNS24246 1044 945 23.6779 2.09377 PNS24248 1044 945 23.6779 2.09377 PNS24244 1471 1372 118.486 7.21652 PNS24243 293 194 0 0 KQK14069 1603 1504 6709.3 372.775 KQK14071 474 375 65.3758 14.5681 ==> ERR1942990.se.tsv <== BRADI_1g14170v3 6889 BRADI_1g53295v3 80 BRADI_1g59795v3 478 BRADI_1g07683v3 0 BRADI_1g00485v3 7 BRADI_1g20270v3 663 BRADI_1g74790v3 748 BRADI_1g09890v3 4 BRADI_1g77505v3 553 BRADI_1g48960v3 0 ERR1942990 completed mapping pipeline successfully