Starting /dee2/code/volunteer_pipeline.sh ERR1942994 current disk space = 1523539042304 free memory = 1560631004 ERR1942994 SRAfilesize c97328562c87879acade82deb601c4ab ERR1942994.sra ERR1942994.sra file validated ERR1942994 is single end ERR1942994 is conventional basespace ERR1942994 read1 length is 25-258 nt ##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1942994_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000 Sequences flagged as poor quality 0 Sequence length 25-258 %GC 63 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.378 26.0 23.0 27.0 18.0 29.0 2 23.03675 24.0 21.0 27.0 14.0 28.0 3 23.4705 25.0 22.0 27.0 14.0 28.0 4 23.74875 25.0 22.0 27.0 14.0 28.0 5 22.784 24.0 20.0 27.0 14.0 28.0 6 23.30925 24.0 21.0 27.0 14.0 28.0 7 23.33725 24.0 21.0 27.0 14.0 28.0 8 23.87575 25.0 22.0 27.0 16.0 28.0 9 23.29275 24.0 21.0 27.0 16.0 28.0 10-14 24.035800000000002 25.2 22.0 27.2 17.0 28.6 15-19 24.022399999999998 25.4 22.0 27.2 17.2 28.4 20-24 23.48985 24.4 21.4 27.0 15.0 28.0 25-29 23.6456315881713 25.0 21.8 27.0 14.6 28.2 30-34 23.57226349457884 24.6 21.4 27.0 15.4 28.0 35-39 23.489160493321858 24.6 21.6 27.0 15.0 28.0 40-44 23.258769879041658 24.4 21.4 27.0 14.2 28.0 45-49 23.309175095848115 24.4 21.2 27.0 14.4 28.0 50-54 23.362821633787185 24.2 21.4 27.0 14.6 28.0 55-59 22.957782527638475 24.2 20.6 27.0 14.0 28.0 60-64 22.7836465895997 24.0 20.2 27.0 14.0 28.0 65-69 22.58046667632213 23.8 20.0 27.0 14.0 28.0 70-74 22.70222327989749 23.8 20.2 26.8 14.0 28.0 75-79 22.01482813707741 23.4 19.4 26.4 13.4 28.0 80-84 21.957714233001237 23.0 19.2 26.4 13.4 28.0 85-89 21.553794439837542 22.8 18.6 26.0 13.4 28.0 90-94 21.28469233761132 22.2 18.0 25.6 13.0 27.4 95-99 21.735062462150005 23.0 19.4 26.0 13.2 27.8 100-104 21.835797036738477 23.0 19.4 26.0 13.8 27.6 105-109 21.55275843521148 22.8 19.0 25.8 13.4 27.8 110-114 21.263249950677466 22.6 18.4 25.8 12.8 27.0 115-119 21.036608670766665 22.0 18.0 25.2 12.8 27.0 120-124 20.751761288419583 22.0 17.2 25.0 12.4 27.0 125-129 20.513746967823323 22.0 16.0 25.0 12.2 27.0 130-134 20.059119265567933 20.8 14.2 25.0 10.8 27.0 135-139 20.051409168639474 21.0 15.2 24.4 12.0 26.4 140-144 20.016238442889044 20.8 15.6 24.0 12.8 26.0 145-149 20.3243651346362 21.6 17.2 24.0 12.6 26.0 150-154 20.350879611932022 21.2 17.8 24.0 13.2 26.0 155-159 20.042296649832746 20.6 16.0 24.0 12.8 26.0 160-164 19.422010358982412 20.0 14.2 23.4 12.2 25.6 165-169 19.75867669251259 20.6 14.2 23.8 12.2 25.8 170-174 20.12466987951895 21.0 16.0 24.0 13.0 26.0 175-179 19.51466169987133 20.2 14.2 23.4 12.4 25.8 180-184 19.580130674297582 20.2 14.6 23.4 12.6 25.0 185-189 20.144041114421242 21.0 16.2 24.2 12.4 25.6 190-194 19.218129929537344 20.0 14.0 23.6 11.4 25.0 195-199 19.794601246941927 20.2 15.2 23.4 12.8 25.6 200-204 19.723110951767367 20.4 14.8 23.8 12.6 25.6 205-209 20.237012604983743 21.25 15.5 24.0 12.75 25.5 210-214 19.09215986118854 NaN NaN NaN NaN NaN 215-219 18.89274979301209 NaN NaN NaN NaN NaN 220-224 19.145501212502648 NaN NaN NaN NaN NaN 225-229 17.245707070707073 NaN NaN NaN NaN NaN 230-234 18.03341658341658 NaN NaN NaN NaN NaN 235-239 18.38222222222222 NaN NaN NaN NaN NaN 240-244 21.033333333333335 NaN NaN NaN NaN NaN 245-249 19.593333333333334 NaN NaN NaN NaN NaN 250-254 22.133333333333333 NaN NaN NaN NaN NaN 255-258 17.25 NaN NaN NaN NaN NaN >>END_MODULE >>Per sequence quality scores warn #Quality Count 15 3.0 16 13.0 17 76.0 18 186.0 19 346.0 20 455.0 21 534.0 22 542.0 23 557.0 24 496.0 25 389.0 26 312.0 27 91.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.65 49.575 9.175 22.6 2 26.974999999999998 49.55 6.125 17.349999999999998 3 24.474999999999998 23.674999999999997 9.5 42.35 4 32.05 25.8 12.45 29.7 5 19.6 42.625 15.725 22.05 6 30.0 18.9 8.200000000000001 42.9 7 26.35 27.900000000000002 26.55 19.2 8 13.475000000000001 20.775 9.425 56.325 9 25.8 17.424999999999997 6.8500000000000005 49.925000000000004 10-14 27.675 18.365000000000002 13.715 40.245 15-19 34.305 22.68 10.15 32.865 20-24 27.21 19.525000000000002 17.224999999999998 36.04 25-29 32.1321019875527 19.26320016061032 10.921501706484642 37.68319614535234 30-34 30.99752262500632 21.608776985691897 14.363719096010922 33.02998129329087 35-39 29.231082180634658 22.574247355573636 10.99979658258747 37.19487388120423 40-44 27.66883416107726 27.36675029440377 14.10578055399109 30.85863499052788 45-49 24.1456204947363 26.401493543535757 11.284551159052015 38.16833480267593 50-54 27.39704329461457 24.551214361140445 14.551214361140444 33.50052798310454 55-59 21.401596892533448 25.1348726801899 17.835563228312473 35.62796719896418 60-64 23.585900638356925 28.126561199000832 16.863724673882878 31.423813488759368 65-69 36.15926953305594 14.563106796116504 15.499306518723992 33.77831715210356 70-74 29.80680204925622 18.066786000864145 17.55447194617616 34.571940003703475 75-79 22.936016511867905 24.832301341589265 16.40221878224974 35.82946336429308 80-84 32.69734632180047 20.0 11.21263016459523 36.0900235136043 85-89 30.119369049310784 20.94642603382123 14.786130453318174 34.14807446354981 90-94 20.72274703853651 26.383265856950068 16.074373969110813 36.819613135402605 95-99 24.471420532197122 22.61435806736876 17.26826915346893 35.64595224696519 100-104 21.59847764034253 18.536458783842228 20.283712481619236 39.581351094196 105-109 31.39851967276977 16.186209583171017 13.712504869497469 38.70276587456175 110-114 34.95917256396298 14.850299401197606 14.741426238432226 35.449101796407184 115-119 22.452670927288075 19.486313758591585 18.786928735077776 39.27408657904257 120-124 31.13955753443718 14.48448587727842 16.40461945178795 37.97133713649645 125-129 31.295691398351224 13.423549541141702 18.261004821900762 37.01975423860632 130-134 24.525371073524337 19.796341042457716 9.130134622022783 46.54815326199517 135-139 26.55792555416144 25.073191133416977 11.292346298619824 37.076537013801754 140-144 28.906627963231735 20.924044508950168 13.425253991291727 36.744073536526365 145-149 27.633342267488608 19.136960600375236 14.071294559099437 39.158402573036724 150-154 25.74992574992575 23.195723195723193 12.117612117612117 38.936738936738934 155-159 26.35483870967742 17.806451612903228 17.967741935483872 37.87096774193549 160-164 31.704668838219323 15.997104596453129 11.328266377126312 40.969960188201235 165-169 30.72050673000792 18.091844813935076 11.401425178147269 39.78622327790974 170-174 24.57442164993453 21.038847664775208 15.18987341772152 39.196857267568745 175-179 27.115188583078492 11.977573904179408 24.566768603465853 36.34046890927625 180-184 31.136638452237005 13.905683192261185 17.95646916565901 37.001209189842804 185-189 30.054221533694808 16.343919442292794 12.393493415956623 41.20836560805577 190-194 24.368932038834952 15.825242718446603 20.0 39.80582524271845 195-199 24.547511312217193 15.95022624434389 21.49321266968326 38.009049773755656 200-204 26.06310013717421 19.753086419753085 17.969821673525377 36.21399176954733 205-209 21.755027422303474 21.572212065813527 17.73308957952468 38.93967093235832 210-214 27.34375 9.895833333333332 27.864583333333332 34.89583333333333 215-219 30.036630036630036 19.047619047619047 16.84981684981685 34.065934065934066 220-224 24.456521739130434 19.565217391304348 10.869565217391305 45.108695652173914 225-229 19.0 26.0 16.0 39.0 230-234 17.741935483870968 20.967741935483872 24.193548387096776 37.096774193548384 235-239 31.914893617021278 10.638297872340425 27.659574468085108 29.78723404255319 240-244 32.35294117647059 17.647058823529413 23.52941176470588 26.47058823529412 245-249 26.08695652173913 21.73913043478261 17.391304347826086 34.78260869565217 250-254 33.33333333333333 8.333333333333332 16.666666666666664 41.66666666666667 255-258 33.33333333333333 0.0 16.666666666666664 50.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.5 29 1.5 30 2.5 31 3.0 32 2.5 33 4.5 34 7.5 35 8.0 36 11.0 37 11.5 38 7.5 39 10.0 40 12.5 41 10.0 42 11.0 43 11.5 44 11.5 45 15.5 46 23.0 47 41.0 48 50.0 49 35.5 50 26.5 51 19.5 52 11.0 53 13.5 54 25.0 55 39.5 56 45.0 57 43.5 58 52.5 59 122.5 60 246.0 61 356.8333333333333 62 464.5 63 619.8333333333326 64 529.1666666666656 65 388.50000000000034 66 334.333333333333 67 232.33333333333334 68 235.83333333333331 69 184.5 70 129.5 71 94.0 72 48.5 73 34.0 74 37.5 75 40.0 76 29.0 77 17.5 78 13.0 79 9.0 80 5.0 81 2.5 82 1.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0 25-29 0.0 30-34 0.0 35-39 0.0 40-44 0.0 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-104 0.0 105-109 0.0 110-114 0.0 115-119 0.0 120-124 0.0 125-129 0.0 130-134 0.0 135-139 0.0 140-144 0.0 145-149 0.0 150-154 0.0 155-159 0.0 160-164 0.0 165-169 0.0 170-174 0.0 175-179 0.0 180-184 0.0 185-189 0.0 190-194 0.0 195-199 0.0 200-204 0.0 205-209 0.0 210-214 0.0 215-219 0.0 220-224 0.0 225-229 0.0 230-234 0.0 235-239 0.0 240-244 0.0 245-249 0.0 250-254 0.0 255-258 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 25-29 36.0 30-34 25.0 35-39 20.0 40-44 36.0 45-49 65.0 50-54 64.0 55-59 112.0 60-64 92.0 65-69 232.0 70-74 168.0 75-79 123.0 80-84 138.0 85-89 151.0 90-94 178.0 95-99 159.0 100-104 219.0 105-109 276.0 110-114 161.0 115-119 232.0 120-124 173.0 125-129 134.0 130-134 140.0 135-139 205.0 140-144 73.0 145-149 92.0 150-154 47.0 155-159 75.0 160-164 51.0 165-169 40.0 170-174 67.0 175-179 58.0 180-184 74.0 185-189 62.0 190-194 38.0 195-199 20.0 200-204 39.0 205-209 38.0 210-214 26.0 215-219 15.0 220-224 22.0 225-229 10.0 230-234 4.0 235-239 1.0 240-244 3.0 245-249 3.0 250-254 1.0 255-259 2.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.475 #Duplication Level Percentage of deduplicated Percentage of total 1 77.66032417195208 27.55 2 8.386187455954898 5.949999999999999 3 3.9464411557434813 4.2 4 1.9732205778717407 2.8000000000000003 5 0.7751937984496124 1.375 6 0.6342494714587738 1.35 7 0.7047216349541932 1.7500000000000002 8 1.0570824524312896 3.0 9 0.3523608174770966 1.125 >10 4.08738548273432 26.700000000000003 >50 0.07047216349541931 2.275 >100 0.3523608174770966 21.925 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGA 387 9.675 No Hit AGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGC 146 3.65 No Hit AACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 123 3.075 No Hit TAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTG 118 2.9499999999999997 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCAT 103 2.5749999999999997 No Hit GTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCT 91 2.275 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCG 49 1.225 No Hit GACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGA 41 1.0250000000000001 No Hit AACGACTCCAGCCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAG 38 0.95 No Hit AACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGT 37 0.9249999999999999 No Hit ACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCAT 32 0.8 No Hit ACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCG 29 0.7250000000000001 No Hit AAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACAC 27 0.675 No Hit CGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCA 25 0.625 No Hit AGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAG 24 0.6 No Hit ACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGA 23 0.575 No Hit GCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACA 23 0.575 No Hit GCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGC 23 0.575 No Hit AGTTCGACACCGTGAGCAACCCGCTCAGGACGCAGGCCGGGAGCAGCTCC 23 0.575 No Hit CAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGA 22 0.5499999999999999 No Hit CGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGC 22 0.5499999999999999 No Hit CGGCGAGGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGA 21 0.525 No Hit TTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAA 21 0.525 No Hit ACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGG 21 0.525 No Hit AGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGT 20 0.5 No Hit TAACTGTATGACATGTAACCACACTCTGCTTTACCTGACCACCACACACA 20 0.5 No Hit GGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCA 19 0.475 No Hit CAGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACAC 19 0.475 No Hit GGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAG 19 0.475 No Hit AGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACACGCGTTCACGAGCC 19 0.475 No Hit AACATAACAGGCGTGCTAGCGAAAAGCCGGGCAGTTCAACACGTTCATCC 18 0.44999999999999996 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAAACGACCAAG 18 0.44999999999999996 No Hit CGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACG 17 0.42500000000000004 No Hit GGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCATGGTGACGGTTGAGC 16 0.4 No Hit AAGCTCTCCACCAGATAGATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGATTACACCACCAG 16 0.4 No Hit ACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGAC 15 0.375 No Hit GCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCG 15 0.375 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGT 15 0.375 No Hit ACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGAC 15 0.375 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTC 14 0.35000000000000003 No Hit GTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCA 14 0.35000000000000003 No Hit TCACGGAACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGA 14 0.35000000000000003 No Hit CGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTA 14 0.35000000000000003 No Hit CCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGA 14 0.35000000000000003 No Hit CGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGC 14 0.35000000000000003 No Hit AATGGAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGC 14 0.35000000000000003 No Hit CAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACA 14 0.35000000000000003 No Hit ACCGGCCAGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACC 13 0.325 No Hit ACAGCTAAGCTCGCAAGCTCTCCACCAGATAGATCACTCTCGCATTTGTC 13 0.325 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACC 13 0.325 No Hit GATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGCCAACGACTCCAGCC 13 0.325 No Hit CACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCG 12 0.3 No Hit ACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTT 12 0.3 No Hit ACCAGATAGATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCAC 12 0.3 No Hit CCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCC 12 0.3 No Hit AGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGTCG 11 0.27499999999999997 No Hit CGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAGCAACC 11 0.27499999999999997 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAA 11 0.27499999999999997 No Hit TAACAGGCGTGCTAGCGAAAAGCCGGGCAGTTCAACACGTTCATCCGGCT 11 0.27499999999999997 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAG 10 0.25 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 10 0.25 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACAA 10 0.25 No Hit CATGTCGCAGTTCGACACCGTGAGCAACCCGCTCAGGACGCAGGCCGGGA 10 0.25 No Hit GGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGC 10 0.25 No Hit CAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCT 9 0.22499999999999998 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAA 9 0.22499999999999998 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGCGTCGGCGCAGGGCCCAACGG 9 0.22499999999999998 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCCAAATCGACA 9 0.22499999999999998 No Hit CGGGCTCACGGTGTTCGCGCCCACGGGCTTTCGGTCCACGGGCCACCGGCCAGCAGGTCAACATCTCCACG 9 0.22499999999999998 No Hit GAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGACATCT 8 0.2 No Hit ACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTT 8 0.2 No Hit GTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACAC 8 0.2 No Hit TGAGCAACCCGCTCAGGACGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAAC 8 0.2 No Hit GTGTTCGCGCCCACGGACACGCGTTCACGAGCCTGGCTTCCGGCACGCTC 8 0.2 No Hit CCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCG 8 0.2 No Hit ACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAA 8 0.2 No Hit CGCCAACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGG 8 0.2 No Hit GACACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGAC 8 0.2 No Hit TGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACG 8 0.2 No Hit CTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCA 8 0.2 No Hit TTTGTCCTCGCTGATAGCTAGAGTTTCACGATTACACCACCAG 8 0.2 No Hit AGATAGATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGAT 8 0.2 No Hit AGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCG 8 0.2 No Hit TCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGC 8 0.2 No Hit GCACCGGCAGCCGGAAACGACCAAGACGACCAACATAACAGGCGTGCTAG 7 0.17500000000000002 No Hit CGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTC 7 0.17500000000000002 No Hit AATGGAAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGG 7 0.17500000000000002 No Hit TCACGAGCCTGGCTTCCGGCTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATC 7 0.17500000000000002 No Hit GACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGA 7 0.17500000000000002 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACC 7 0.17500000000000002 No Hit CGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCC 7 0.17500000000000002 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGACGACCAAGAC 7 0.17500000000000002 No Hit CGTTCCACGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCAG 7 0.17500000000000002 No Hit CCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 7 0.17500000000000002 No Hit CCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACG 6 0.15 No Hit AACGACTCCAGCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGAC 6 0.15 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCATGTCGCAGTTCGACACCG 6 0.15 No Hit CGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTC 6 0.15 No Hit GTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCAG 6 0.15 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAAACGACCAGA 6 0.15 No Hit GTTCCACGGGCGTCGCCGCCCCAAATCGACAACCAGCTCAACAGCTCCCA 6 0.15 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCATG 6 0.15 No Hit CGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGG 6 0.15 No Hit CCAGAATGGAAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCA 5 0.125 No Hit GTTCCACGGGCGTCGCCGCCCCAAATCGACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGT 5 0.125 No Hit AGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACGGCGGCGCC 5 0.125 No Hit AGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGC 5 0.125 No Hit CGGAACGACCAAGACGACCAACATAACAAGCGTGCTAGCGAAAGCCGGGC 5 0.125 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAGAC 5 0.125 No Hit CCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAA 5 0.125 No Hit GGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCC 5 0.125 No Hit TCCACGGCGGTGCCCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGG 5 0.125 No Hit ACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACACGCGT 5 0.125 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACGGCAGCCGGAACGACCAAGAC 5 0.125 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-14 0.0 0.0 0.0 0.0 0.0 15-19 0.0 0.0 0.0 0.0 0.0 20-24 0.0 0.0 0.0 0.0 0.0 25-29 0.0 0.0 0.0 0.0 0.0 30-34 0.0 0.0 0.0 0.0 0.0 35-39 0.0 0.0 0.0 0.0 0.0 40-44 0.0 0.0 0.0 0.0 0.0 45-49 0.0 0.0 0.0 0.0 0.0 50-54 0.0 0.0 0.0 0.0 0.0 55-59 0.0 0.0 0.0 0.0 0.0 60-64 0.0 0.0 0.0 0.0 0.0 65-69 0.0 0.0 0.0 0.0 0.0 70-74 0.0 0.0 0.0 0.0 0.0 75-79 0.0 0.0 0.0 0.0 0.0 80-84 0.0 0.0 0.0 0.0 0.0 85-89 0.0 0.0 0.0 0.0 0.0 90-94 0.0 0.0 0.0 0.0 0.0 95-99 0.0 0.0 0.0 0.0 0.0 100-104 0.0 0.0 0.0 0.0 0.0 105-109 0.0 0.0 0.0 0.0 0.0 110-114 0.0 0.0 0.0 0.0 0.0 115-119 0.0 0.0 0.0 0.0 0.0 120-124 0.0 0.0 0.0 0.0 0.0 125-129 0.0 0.0 0.0 0.0 0.0 130-134 0.0 0.0 0.0 0.0 0.0 135-139 0.0 0.0 0.0 0.0 0.0 140-144 0.0 0.0 0.0 0.0 0.0 145-149 0.0 0.0 0.0 0.0 0.0 150-154 0.0 0.0 0.0 0.0 0.0 155-159 0.0 0.0 0.0 0.0 0.0 160-164 0.0 0.0 0.0 0.0 0.0 165-169 0.0 0.0 0.0 0.0 0.0 170-174 0.0 0.0 0.0 0.0 0.0 175-179 0.0 0.0 0.0 0.0 0.0 180-184 0.0 0.0 0.0 0.0 0.0 185-189 0.0 0.0 0.0 0.0 0.0 190-194 0.0 0.0 0.0 0.0 0.0 195-199 0.0 0.0 0.0 0.0 0.0 200-204 0.0 0.0 0.0 0.0 0.0 205-209 0.0 0.0 0.0 0.0 0.0 210-214 0.0 0.0 0.0 0.0 0.0 215-219 0.0 0.0 0.0 0.0 0.0 220-224 0.0 0.0 0.0 0.0 0.0 225-229 0.0 0.0 0.0 0.0 0.0 230-234 0.0 0.0 0.0 0.0 0.0 235-239 0.0 0.0 0.0 0.0 0.0 240-244 0.0 0.0 0.0 0.0 0.0 245-246 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGACAGC 70 0.0 644.5 215 AACGACT 85 0.0 92.88382 1 CAGCCCC 90 0.0 87.72361 9 ACGACTC 90 0.0 87.72361 2 CGACTCC 90 0.0 87.72361 3 CCAGCCC 95 0.0 83.106575 8 CTCCAGC 95 0.0 83.106575 6 ACTCCAG 95 0.0 83.106575 5 TCCAGCC 95 0.0 83.106575 7 GACTCCA 95 0.0 83.106575 4 GCTCCGG 120 8.374627E-9 75.191666 190-194 CGTCGCG 15 0.0042236988 58.973858 120-124 ACTCGCT 160 0.007824313 56.393753 205-209 CTCCGGC 110 2.4574547E-9 45.570705 190-194 AGAAGAA 75 9.352545E-5 37.595833 2 GAAGAAC 75 9.352545E-5 37.595833 3 AGAACTC 75 9.352545E-5 37.595833 5 GAACTCG 75 9.352545E-5 37.595833 6 AAGAACT 75 9.352545E-5 37.595833 4 CAGAAGA 75 9.352545E-5 37.595833 1 >>END_MODULE Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra Read 1314758 spots for ERR1942994.sra Written 1314758 spots for ERR1942994.sra Read 1314755 spots for ERR1942994.sra Written 1314755 spots for ERR1942994.sra SRR ids: ['ERR1942994.sra'] extra args: ['--split-files', '--defline-qual', '+'] tempdir: /tmp/pfd_ej5x5ewk ERR1942994.sra spots: 26295103 blocks: [[1, 1314755], [1314756, 2629510], [2629511, 3944265], [3944266, 5259020], [5259021, 6573775], [6573776, 7888530], [7888531, 9203285], [9203286, 10518040], [10518041, 11832795], [11832796, 13147550], [13147551, 14462305], [14462306, 15777060], [15777061, 17091815], [17091816, 18406570], [18406571, 19721325], [19721326, 21036080], [21036081, 22350835], [22350836, 23665590], [23665591, 24980345], [24980346, 26295103]] ERR1942994 file size 6896872 ERR1942994 completed basic pipeline successfully skewer v0.2.2 [April 4, 2016] COMMAND LINE: skewer -f sanger -l 18 -q 10 -k inf -t 20 -o ERR1942994 ERR1942994_1.fastq Input file: ERR1942994_1.fastq trimmed: ERR1942994-trimmed.fastq Parameters used: -- 3' end adapter sequence (-x): AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -- maximum error ratio allowed (-r): 0.100 -- maximum indel error ratio allowed (-d): 0.030 -- end quality threshold (-q): 10 -- minimum read length allowed after trimming (-l): 18 -- file format (-f): Sanger/Illumina 1.8+ FASTQ -- minimum overlap length for adapter detection (-k): inf -- number of concurrent threads (-t): 20 Tue Dec 10 00:49:13 2024 >> started Tue Dec 10 00:49:27 2024 >> done (13.603s) 26295103 reads processed; of these: 285 ( 0.00%) short reads filtered out after trimming by size control 0 ( 0.00%) empty reads filtered out after trimming by size control 26294818 (100.00%) reads available; of these: 1560532 ( 5.93%) trimmed reads available after processing 24734286 (94.07%) untrimmed reads available after processing Length distribution of reads after trimming: length count percentage 18 340 0.00% 19 573 0.00% 20 777 0.00% 21 1285 0.00% 22 1875 0.01% 23 2604 0.01% 24 6539 0.02% 25 33758 0.13% 26 34317 0.13% 27 35878 0.14% 28 36779 0.14% 29 37461 0.14% 30 37369 0.14% 31 38423 0.15% 32 38451 0.15% 33 38895 0.15% 34 39495 0.15% 35 39873 0.15% 36 42452 0.16% 37 41924 0.16% 38 42296 0.16% 39 43212 0.16% 40 43672 0.17% 41 45447 0.17% 42 46545 0.18% 43 47884 0.18% 44 49277 0.19% 45 51444 0.20% 46 53233 0.20% 47 54978 0.21% 48 57566 0.22% 49 59321 0.23% 50 61198 0.23% 51 65619 0.25% 52 68061 0.26% 53 71910 0.27% 54 73900 0.28% 55 76640 0.29% 56 81493 0.31% 57 88768 0.34% 58 91401 0.35% 59 92490 0.35% 60 98734 0.38% 61 103014 0.39% 62 113439 0.43% 63 131066 0.50% 64 125801 0.48% 65 122754 0.47% 66 127471 0.48% 67 132073 0.50% 68 139447 0.53% 69 147395 0.56% 70 152537 0.58% 71 156102 0.59% 72 161564 0.61% 73 166517 0.63% 74 179754 0.68% 75 182735 0.69% 76 189556 0.72% 77 205512 0.78% 78 200502 0.76% 79 209552 0.80% 80 208673 0.79% 81 210708 0.80% 82 218380 0.83% 83 219323 0.83% 84 227333 0.86% 85 229394 0.87% 86 236961 0.90% 87 237913 0.90% 88 239966 0.91% 89 243945 0.93% 90 262468 1.00% 91 254504 0.97% 92 257306 0.98% 93 263801 1.00% 94 263537 1.00% 95 278436 1.06% 96 282556 1.07% 97 277800 1.06% 98 294732 1.12% 99 284295 1.08% 100 288044 1.10% 101 294331 1.12% 102 293575 1.12% 103 289566 1.10% 104 290789 1.11% 105 292967 1.11% 106 287292 1.09% 107 286867 1.09% 108 286097 1.09% 109 291884 1.11% 110 300755 1.14% 111 321637 1.22% 112 297227 1.13% 113 285172 1.08% 114 288566 1.10% 115 283607 1.08% 116 276399 1.05% 117 280866 1.07% 118 281105 1.07% 119 276788 1.05% 120 267809 1.02% 121 262873 1.00% 122 261176 0.99% 123 255756 0.97% 124 254372 0.97% 125 249743 0.95% 126 251705 0.96% 127 240550 0.91% 128 236318 0.90% 129 235635 0.90% 130 232566 0.88% 131 221833 0.84% 132 219939 0.84% 133 212388 0.81% 134 212979 0.81% 135 214169 0.81% 136 207954 0.79% 137 202031 0.77% 138 202257 0.77% 139 195412 0.74% 140 195302 0.74% 141 195891 0.74% 142 183406 0.70% 143 176527 0.67% 144 177078 0.67% 145 172695 0.66% 146 172762 0.66% 147 162955 0.62% 148 160132 0.61% 149 156798 0.60% 150 151020 0.57% 151 144343 0.55% 152 139606 0.53% 153 138360 0.53% 154 138092 0.53% 155 132248 0.50% 156 126831 0.48% 157 131057 0.50% 158 121838 0.46% 159 117968 0.45% 160 113941 0.43% 161 112949 0.43% 162 112186 0.43% 163 113827 0.43% 164 106711 0.41% 165 99840 0.38% 166 93885 0.36% 167 92109 0.35% 168 88790 0.34% 169 86727 0.33% 170 83253 0.32% 171 81579 0.31% 172 76768 0.29% 173 74638 0.28% 174 71386 0.27% 175 67595 0.26% 176 66192 0.25% 177 66075 0.25% 178 63957 0.24% 179 59836 0.23% 180 57828 0.22% 181 55761 0.21% 182 52966 0.20% 183 50294 0.19% 184 48209 0.18% 185 45203 0.17% 186 43452 0.17% 187 41956 0.16% 188 39732 0.15% 189 37415 0.14% 190 35368 0.13% 191 33462 0.13% 192 32607 0.12% 193 31400 0.12% 194 30173 0.11% 195 28857 0.11% 196 27409 0.10% 197 25472 0.10% 198 24150 0.09% 199 22703 0.09% 200 21855 0.08% 201 21005 0.08% 202 19629 0.07% 203 18786 0.07% 204 18069 0.07% 205 17477 0.07% 206 16277 0.06% 207 15270 0.06% 208 14195 0.05% 209 13443 0.05% 210 12617 0.05% 211 11834 0.05% 212 11621 0.04% 213 11084 0.04% 214 10139 0.04% 215 9571 0.04% 216 8874 0.03% 217 8169 0.03% 218 7628 0.03% 219 6918 0.03% 220 6660 0.03% 221 6135 0.02% 222 5854 0.02% 223 5226 0.02% 224 5057 0.02% 225 4568 0.02% 226 4379 0.02% 227 3942 0.01% 228 3627 0.01% 229 3400 0.01% 230 3209 0.01% 231 2921 0.01% 232 2653 0.01% 233 2417 0.01% 234 2236 0.01% 235 2103 0.01% 236 1962 0.01% 237 1864 0.01% 238 1591 0.01% 239 1399 0.01% 240 1376 0.01% 241 1261 0.00% 242 1076 0.00% 243 1010 0.00% 244 897 0.00% 245 787 0.00% 246 729 0.00% 247 724 0.00% 248 623 0.00% 249 505 0.00% 250 497 0.00% 251 435 0.00% 252 397 0.00% 253 370 0.00% 254 340 0.00% 255 266 0.00% 256 228 0.00% 257 230 0.00% 258 217 0.00% 259 162 0.00% 260 152 0.00% 261 133 0.00% 262 122 0.00% 263 111 0.00% 264 120 0.00% 265 97 0.00% 266 77 0.00% 267 68 0.00% 268 64 0.00% 269 52 0.00% 270 48 0.00% 271 52 0.00% 272 34 0.00% 273 32 0.00% 274 42 0.00% 275 30 0.00% 276 20 0.00% 277 22 0.00% 278 19 0.00% 279 25 0.00% 280 14 0.00% 281 10 0.00% 282 13 0.00% 283 7 0.00% 284 7 0.00% 285 8 0.00% 286 9 0.00% 287 7 0.00% 288 4 0.00% 289 2 0.00% 290 6 0.00% 291 8 0.00% 292 6 0.00% 293 4 0.00% 294 2 0.00% 295 5 0.00% 296 3 0.00% 297 1 0.00% 298 0 0.00% 299 3 0.00% 300 0 0.00% 301 3 0.00% 302 2 0.00% 303 2 0.00% 304 0 0.00% 305 3 0.00% 306 2 0.00% 307 0 0.00% 308 2 0.00% 309 2 0.00% 310 0 0.00% 311 1 0.00% 312 1 0.00% 313 0 0.00% 314 0 0.00% 315 0 0.00% 316 1 0.00% 317 0 0.00% 318 1 0.00% 319 3 0.00% 320 1 0.00% 321 0 0.00% 322 1 0.00% 323 0 0.00% 324 0 0.00% 325 0 0.00% 326 0 0.00% 327 1 0.00% 328 0 0.00% 329 0 0.00% 330 0 0.00% 331 1 0.00% 332 1 0.00% 333 0 0.00% 334 0 0.00% 335 0 0.00% 336 1 0.00% 337 0 0.00% 338 1 0.00% 339 0 0.00% 340 0 0.00% 341 0 0.00% 342 0 0.00% 343 0 0.00% 344 0 0.00% 345 0 0.00% 346 0 0.00% 347 1 0.00% 348 0 0.00% 349 1 0.00% 350 1 0.00% 351 0 0.00% 352 1 0.00% 353 1 0.00% 354 0 0.00% 355 0 0.00% 356 0 0.00% 357 1 0.00% 358 1 0.00% 26294818 reads passed initial QC criterion=sequence-density sequence-density=1.90 sequence-density-rank=1 fanout-score=1.76 fanout-score-rank=35 prefix-density=0.64 prefix-fanout=1.8 sequence=AAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTG criterion=fanout-score sequence-density=0.07 sequence-density-rank=31 fanout-score=21.34 fanout-score-rank=1 prefix-density=0.68 prefix-fanout=2.1 sequence=TGCAAGTGCGGGGACAACTGCACCTGCAACCCGTGCACCTGCAAGTGAAACTCAACTTGAGCAAATCGATGGATCCATCCATGCATGCAGATCAGGTCACATGGATGCAAGACTAGTAGTACCAACTAGTGTGTCGTTTCAGTCAGTTATCATAAGACAAGAATAAGACTTTCAGTCGATCTCGTGGATCCATCTGTCTTATCTGTAATCATCTGGATCAAAGTATCCAGCTATCTATCTGTGTCAGATCTTTATCTGGAGTTTATATATATGTAATGTAATTCCAATTTCTGTCT Started job on | Dec 10 00:49:39 Started mapping on | Dec 10 00:49:39 Finished on | Dec 10 00:50:36 Mapping speed, Million of reads per hour | 1660.73 Number of input reads | 26294818 Average input read length | 112 UNIQUE READS: Uniquely mapped reads number | 19679258 Uniquely mapped reads % | 74.84% Average mapped length | 109.15 Number of splices: Total | 5807874 Number of splices: Annotated (sjdb) | 5345540 Number of splices: GT/AG | 5577976 Number of splices: GC/AG | 73194 Number of splices: AT/AC | 3803 Number of splices: Non-canonical | 152901 Mismatch rate per base, % | 0.65% Deletion rate per base | 0.32% Deletion average length | 1.14 Insertion rate per base | 0.54% Insertion average length | 1.29 MULTI-MAPPING READS: Number of reads mapped to multiple loci | 1227995 % of reads mapped to multiple loci | 4.67% Number of reads mapped to too many loci | 1104080 % of reads mapped to too many loci | 4.20% UNMAPPED READS: % of reads unmapped: too many mismatches | 0.00% % of reads unmapped: too short | 12.35% % of reads unmapped: other | 3.94% CHIMERIC READS: Number of chimeric reads | 0 % of chimeric reads | 0.00% N_unmapped 5387565 5387565 5387565 N_multimapping 1227995 1227995 1227995 N_noFeature 784434 933324 19140317 N_ambiguous 446427 63313 2475 UnstrandedReadsAssigned:18448397 PositiveStrandReadsAssigned:18682621 NegativeStrandReadsAssigned:536466 Dataset is classified positive stranded MeadianReadLen=110 20thPercentileLength=82 echo kmer=77 ERR1942994 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31 [quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20 [index] k-mer length: 31 [index] number of targets: 52,972 [index] number of k-mers: 66,720,672 [index] number of equivalence classes: 111,837 [quant] running in single-end mode [quant] will process file 1: ERR1942994-trimmed.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 26,294,818 reads, 20,291,754 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,223 rounds 52973 ERR1942994.ke.tsv 35125 ERR1942994.se.tsv 88098 total ==> ERR1942994.ke.tsv <== target_id length eff_length est_counts tpm PNS24245 936 837 264.656 22.1391 PNS24247 1044 945 2.91667 0.216103 PNS24249 1928 1829 0 0 PNS24246 1044 945 2.91667 0.216103 PNS24248 1044 945 2.91667 0.216103 PNS24244 1471 1372 202.594 10.339 PNS24243 293 194 0 0 KQK14069 1603 1504 8490.46 395.265 KQK14071 474 375 12.7282 2.37652 ==> ERR1942994.se.tsv <== BRADI_1g14170v3 8495 BRADI_1g53295v3 90 BRADI_1g59795v3 480 BRADI_1g07683v3 0 BRADI_1g00485v3 32 BRADI_1g20270v3 678 BRADI_1g74790v3 393 BRADI_1g09890v3 0 BRADI_1g77505v3 417 BRADI_1g48960v3 0 ERR1942994 completed mapping pipeline successfully