Starting /dee2/code/volunteer_pipeline.sh ERR1942997 current disk space = 1523517255680 free memory = 1600779384 ERR1942997 SRAfilesize c67597da08c72c1e9cd7a0f744e2fc13 ERR1942997.sra ERR1942997.sra file validated ERR1942997 is single end ERR1942997 is conventional basespace ERR1942997 read1 length is 26-279 nt ##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename ERR1942997_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000 Sequences flagged as poor quality 0 Sequence length 26-279 %GC 58 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.058 26.0 23.0 28.0 20.0 29.0 2 24.8955 27.0 23.0 28.0 19.0 29.0 3 24.8215 26.0 23.0 28.0 20.0 29.0 4 24.62375 26.0 23.0 28.0 15.0 29.0 5 24.1335 26.0 22.0 28.0 14.0 29.0 6 24.52425 26.0 22.0 28.0 15.0 29.0 7 23.63625 24.0 22.0 27.0 17.0 28.0 8 24.60325 26.0 23.0 28.0 19.0 29.0 9 24.1035 26.0 22.0 28.0 15.0 29.0 10-14 24.6741 25.8 22.8 27.6 19.6 29.0 15-19 24.226 25.6 22.2 27.8 17.8 28.8 20-24 24.1208 25.4 22.2 27.2 17.0 28.6 25-29 24.06449041235272 25.4 22.4 27.4 16.4 28.6 30-34 24.069884973436615 25.8 22.2 27.6 15.6 28.6 35-39 24.283000545295348 25.8 22.4 27.6 17.6 28.6 40-44 23.851198269819452 25.2 22.0 27.2 15.0 28.2 45-49 24.106792794109364 25.4 22.2 27.2 17.8 28.0 50-54 24.178207881523353 25.4 22.2 27.4 18.2 28.2 55-59 24.19558841692202 25.6 22.2 27.8 17.2 28.2 60-64 23.81982782971651 25.0 22.0 27.0 15.8 28.0 65-69 23.947730071017638 25.0 22.0 27.4 17.2 28.0 70-74 23.180242573996367 24.8 20.8 27.0 14.0 28.0 75-79 23.231275567277216 24.4 20.6 27.0 14.4 28.0 80-84 22.676740756383392 23.8 20.0 27.0 14.0 28.0 85-89 22.577532209599504 23.8 20.0 27.0 13.8 28.0 90-94 22.63489104642986 23.8 20.0 27.0 14.0 28.0 95-99 22.539223739742347 23.8 19.8 27.0 13.8 28.0 100-104 22.375627639713713 23.6 19.6 26.6 13.8 28.0 105-109 22.677000440440196 23.6 20.0 26.8 14.2 28.0 110-114 22.866789053992747 24.2 20.0 27.0 14.0 28.0 115-119 21.81690191775403 23.0 18.8 26.0 13.6 28.0 120-124 21.746468073304285 22.8 19.0 26.0 13.6 27.2 125-129 22.758428818549707 24.0 20.2 26.6 14.0 27.8 130-134 22.353344103040165 23.6 19.6 26.4 13.6 28.0 135-139 21.37656277952916 22.6 18.6 25.6 12.8 27.0 140-144 21.448414016300305 22.4 19.0 25.4 13.6 27.2 145-149 21.727433657894007 22.8 19.6 25.4 13.8 27.4 150-154 21.911809798718203 22.8 19.8 25.4 14.0 27.6 155-159 21.661889394691805 22.8 19.2 25.6 14.0 27.4 160-164 21.60787477482694 22.6 19.0 25.8 13.4 27.6 165-169 21.664598800604075 22.8 19.0 25.8 13.6 27.4 170-174 21.288334253594698 22.4 18.0 25.4 13.4 27.2 175-179 20.30764650486511 21.4 16.4 24.4 12.8 26.4 180-184 20.01949363030774 21.2 15.8 24.2 12.4 25.6 185-189 19.335625765969954 20.2 14.4 23.2 12.6 25.2 190-194 18.43694785260431 NaN NaN NaN NaN NaN 195-199 19.24790495165948 NaN NaN NaN NaN NaN 200-204 20.180164383561642 NaN NaN NaN NaN NaN 205-209 20.12421377580552 NaN NaN NaN NaN NaN 210-214 19.003512452559338 NaN NaN NaN NaN NaN 215-219 20.457626588465295 NaN NaN NaN NaN NaN 220-224 20.095616883116882 NaN NaN NaN NaN NaN 225-229 19.736134453781514 NaN NaN NaN NaN NaN 230-234 19.50879120879121 NaN NaN NaN NaN NaN 235-239 20.995555555555555 NaN NaN NaN NaN NaN 240-244 20.358333333333334 NaN NaN NaN NaN NaN 245-249 21.0 NaN NaN NaN NaN NaN 250-254 20.266666666666666 NaN NaN NaN NaN NaN 255-259 19.2 NaN NaN NaN NaN NaN 260-264 21.0 NaN NaN NaN NaN NaN 265-269 19.4 NaN NaN NaN NaN NaN 270-274 15.8 NaN NaN NaN NaN NaN 275-279 8.0 NaN NaN NaN NaN NaN >>END_MODULE >>Per sequence quality scores warn #Quality Count 15 1.0 16 8.0 17 39.0 18 79.0 19 181.0 20 267.0 21 380.0 22 464.0 23 590.0 24 632.0 25 651.0 26 550.0 27 158.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.0 35.375 27.05 19.575 2 46.75 28.825 6.550000000000001 17.875 3 30.275000000000002 14.325 12.75 42.65 4 38.525 20.175 22.425 18.875 5 21.0 21.775 28.000000000000004 29.225 6 22.525000000000002 20.925 12.2 44.35 7 24.125 25.25 12.950000000000001 37.675 8 19.925 21.875 24.525 33.675 9 17.025000000000002 25.974999999999998 12.5 44.5 10-14 30.785 14.56 20.845 33.81 15-19 37.705 19.115 12.845 30.335 20-24 28.46 19.71 20.41 31.419999999999998 25-29 30.074096325222786 20.196255131671172 16.56653649744668 33.16311204565936 30-34 26.125490986000603 20.43508913284319 16.683452512841175 36.755967368315034 35-39 29.077188006482984 23.399513776337116 16.242909238249595 31.280388978930308 40-44 30.514198004604758 23.960092095165002 14.540803274494756 30.98490662573548 45-49 24.11200414830179 20.31630801140783 19.714804252009333 35.85688358828104 50-54 27.473593446863546 20.203707695624058 21.550980814830783 30.771718042681613 55-59 22.935525073582497 24.37940800799689 17.543177653134894 35.14188926528572 60-64 24.616612507838777 22.227923151473693 22.102502707941394 31.05296163274614 65-69 27.542815051255293 11.988214351482414 29.924498189184213 30.54447240807808 70-74 28.48084187803562 15.414193200215868 30.302212628170533 25.80275229357798 75-79 20.88150289017341 20.859826589595375 25.043352601156073 33.21531791907514 80-84 24.88666562451149 22.393309363764264 23.22182272940441 29.498202282319834 85-89 24.815807099799063 18.812793034159412 26.339584728734096 30.031815137307433 90-94 20.594905792044663 26.68353105373343 21.35380321004885 31.367759944173063 95-99 23.235039861684754 18.269138411295746 27.230813562578042 31.265008164441454 100-104 18.241262683201803 18.489289740698986 26.88838782412627 36.38105975197294 105-109 23.491490458999483 18.604951005673026 23.543063434760185 34.3604951005673 110-114 26.343776947398677 20.278815751652772 23.87180224202357 29.505605058924978 115-119 22.176395939086294 19.16243654822335 29.40989847715736 29.251269035532996 120-124 27.204810495626823 16.636297376093296 26.494169096209912 29.664723032069972 125-129 29.98747913188648 14.232053422370615 26.02253756260434 29.757929883138562 130-134 19.093766369827133 13.750654793085385 23.88685175484547 43.26872708224201 135-139 24.137931034482758 22.17278457545421 20.61549870226177 33.07378568780126 140-144 27.975914775358962 18.943955534969895 22.788327929597035 30.29180176007411 145-149 25.715746421267895 22.750511247443765 21.881390593047033 29.65235173824131 150-154 26.31288004422333 20.121614151464897 27.08678828081813 26.478717523493643 155-159 26.147588611272514 21.034282393957003 24.92736780941313 27.89076118535735 160-164 26.021370207416716 21.18164676304211 15.964802011313639 36.83218101822753 165-169 31.180555555555557 20.97222222222222 18.958333333333332 28.888888888888886 170-174 27.859922178988327 24.82490272373541 16.342412451361866 30.972762645914397 175-179 28.669950738916256 15.566502463054189 22.95566502463054 32.80788177339902 180-184 28.732394366197184 18.87323943661972 20.422535211267608 31.971830985915496 185-189 29.422382671480147 13.176895306859207 21.841155234657037 35.55956678700361 190-194 27.43362831858407 10.619469026548673 23.672566371681416 38.27433628318584 195-199 20.506329113924053 23.544303797468356 21.265822784810126 34.68354430379747 200-204 18.52861035422343 22.615803814713896 29.427792915531338 29.427792915531338 205-209 17.086834733893557 24.649859943977592 30.252100840336134 28.011204481792717 210-214 21.987951807228914 12.048192771084338 38.25301204819277 27.710843373493976 215-219 22.837370242214533 33.910034602076124 18.33910034602076 24.91349480968858 220-224 23.668639053254438 30.17751479289941 14.201183431952662 31.952662721893493 225-229 19.35483870967742 35.483870967741936 17.20430107526882 27.956989247311824 230-234 31.88405797101449 20.28985507246377 17.391304347826086 30.434782608695656 235-239 37.5 10.416666666666668 29.166666666666668 22.916666666666664 240-244 13.157894736842104 23.684210526315788 18.421052631578945 44.73684210526316 245-249 31.25 18.75 31.25 18.75 250-254 0.0 36.36363636363637 18.181818181818183 45.45454545454545 255-259 37.5 12.5 37.5 12.5 260-264 20.0 40.0 40.0 0.0 265-269 20.0 80.0 0.0 0.0 270-274 0.0 60.0 20.0 20.0 275-279 0.0 60.0 20.0 20.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 1.0 23 3.0 24 3.0 25 1.5 26 1.0 27 1.5 28 2.0 29 2.0 30 1.5 31 1.0 32 1.0 33 1.0 34 4.5 35 7.0 36 4.0 37 5.333333333333333 38 8.333333333333334 39 10.666666666666668 40 23.333333333333332 41 23.833333333333332 42 17.666666666666668 43 29.166666666666657 44 56.333333333333336 45 108.5 46 149.5 47 188.0 48 148.16666666666666 49 58.5 50 41.0 51 36.5 52 35.5 53 44.0 54 119.0 55 178.5 56 129.0 57 75.5 58 63.5 59 93.0 60 176.0 61 277.5 62 388.5 63 457.5 64 329.0 65 231.00000000000006 66 244.83333333333334 67 245.33333333333334 68 221.33333333333334 69 128.5 70 103.0 71 88.5 72 48.0 73 53.0 74 72.5 75 87.0 76 94.0 77 51.0 78 12.5 79 11.5 80 6.5 81 2.5 82 1.0 83 0.0 84 0.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0 25-29 0.0 30-34 0.0 35-39 0.0 40-44 0.0 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-104 0.0 105-109 0.0 110-114 0.0 115-119 0.0 120-124 0.0 125-129 0.0 130-134 0.0 135-139 0.0 140-144 0.0 145-149 0.0 150-154 0.0 155-159 0.0 160-164 0.0 165-169 0.0 170-174 0.0 175-179 0.0 180-184 0.0 185-189 0.0 190-194 0.0 195-199 0.0 200-204 0.0 205-209 0.0 210-214 0.0 215-219 0.0 220-224 0.0 225-229 0.0 230-234 0.0 235-239 0.0 240-244 0.0 245-249 0.0 250-254 0.0 255-259 0.0 260-264 0.0 265-269 0.0 270-274 0.0 275-279 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 20-29 17.0 30-39 61.0 40-49 123.0 50-59 244.0 60-69 535.0 70-79 392.0 80-89 310.0 90-99 461.0 100-109 418.0 110-119 301.0 120-129 276.0 130-139 409.0 140-149 82.0 150-159 43.0 160-169 51.0 170-179 119.0 180-189 60.0 190-199 23.0 200-209 6.0 210-219 25.0 220-229 29.0 230-239 6.0 240-249 6.0 250-259 2.0 260-269 0.0 270-279 1.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.1 #Duplication Level Percentage of deduplicated Percentage of total 1 76.36655948553054 23.75 2 7.315112540192927 4.55 3 2.8938906752411575 2.7 4 2.009646302250804 2.5 5 1.607717041800643 2.5 6 1.1254019292604502 2.1 7 0.3215434083601286 0.7000000000000001 8 0.964630225080386 2.4 9 0.40192926045016075 1.125 >10 6.350482315112541 36.075 >50 0.40192926045016075 8.200000000000001 >100 0.2411575562700965 13.4 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCG 274 6.8500000000000005 No Hit AACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGA 143 3.5749999999999997 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTC 119 2.9749999999999996 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 92 2.3 No Hit TGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACACG 64 1.6 No Hit AACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGT 61 1.525 No Hit GTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCT 56 1.4000000000000001 No Hit AGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGC 55 1.375 No Hit GACACGGATTCCACCGCGTCCCGGGCAGCCGGAGGTGGTGGGGGTGGCGG 48 1.2 No Hit CGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAG 46 1.15 No Hit AACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 41 1.0250000000000001 No Hit CGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTT 40 1.0 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCG 40 1.0 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCCAT 38 0.95 No Hit AGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCTCCACG 33 0.8250000000000001 No Hit CACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTTCC 31 0.775 No Hit AACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAG 27 0.675 No Hit CGGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTA 26 0.65 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCCAAATCGACA 26 0.65 No Hit AACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 25 0.625 No Hit GGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCT 25 0.625 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACACACGCTCT 25 0.625 No Hit CAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCAGG 24 0.6 No Hit ACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTG 22 0.5499999999999999 No Hit TCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACA 22 0.5499999999999999 No Hit ATCGACAACCAGCTCAACAGCTCCCAGACGGGCGGGCTCACGGTGTTCGC 21 0.525 No Hit TATAACTAAGCCACAGCTAAGCTCGCAAGCTCTCCACCAGATAGATCACT 21 0.525 No Hit AGGACGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCAC 21 0.525 No Hit CGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCC 21 0.525 No Hit TCCAATCTTGTTATAACTAAGCCACAGCTAAGCTCGCAAGCTCTCCACCA 20 0.5 No Hit GAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAG 20 0.5 No Hit ACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCAT 20 0.5 No Hit GGCCAAGAAGACGCCGGTCGCTGCTGACGCGCCTGGCGGCGCTGATGCCGACACGGATTCCACCGCGTCCGTCA 19 0.475 No Hit GGCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAG 19 0.475 No Hit AGGTCAACCAGGTGCTGCTGCCCATGGCCATCGCCGGGAAGAAGGCGGAC 18 0.44999999999999996 No Hit CAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTG 18 0.44999999999999996 No Hit AAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACAC 18 0.44999999999999996 No Hit TGCGTCCTCTGCTGGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTC 17 0.42500000000000004 No Hit ACGACTCCAGCCCCAGCGGCTCCGGCACCGGCAGCCGGAACGACCAAGAC 17 0.42500000000000004 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAA 17 0.42500000000000004 No Hit TTGTAAAAATTTGATGTACCAACCAGCTCAACAGCTCCCAGACGGGCGGG 17 0.42500000000000004 No Hit TGGCGACTTTGTTTATTTGGTCAACCCGAGCTGATAAGCTTTGACCGTGA 17 0.42500000000000004 No Hit AATCTTGTTATAACTAAGCCACAGCTAAGCTCGCAAGCTCTCCACCAGAT 17 0.42500000000000004 No Hit AGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGG 16 0.4 No Hit CGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 16 0.4 No Hit ACGTTCATCCGGGCAGTTCGACACCGTCCTGATGCTCTGGAGAAACCTGG 16 0.4 No Hit GACACGGATTCCACCGCGTCCCGGGCAGCCGGAGGTGGTGGGGTGGCGG 16 0.4 No Hit TCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTC 16 0.4 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCCAAATCGACAA 16 0.4 No Hit TCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAG 16 0.4 No Hit TCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGATTACACCACCAG 16 0.4 No Hit GCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGG 15 0.375 No Hit CCAGCGGCTCCGGCACCGGCAGCCGAATGGAAGCCATGCAGAGATCATTT 15 0.375 No Hit AGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGCCACCGGCCAGCA 15 0.375 No Hit GCACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGC 15 0.375 No Hit CGAGCTGATAAGCTTTGACCGTGATGATTTGAACTAAATGTCCTTCTAGA 14 0.35000000000000003 No Hit ACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGAC 14 0.35000000000000003 No Hit CGCTCAGGACGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTCACCGC 14 0.35000000000000003 No Hit GTTATAACTAAGCCACAGCTAAGCTCGCAAGCTCTCCACCAGATAGATCA 14 0.35000000000000003 No Hit TGCGTCCTCTGCTGGGGGCTGTGACGTTGCCATGAGACTGCGATTCTCGG 14 0.35000000000000003 No Hit CGGAACGACCAAGACGACCAACATAATAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCC 14 0.35000000000000003 No Hit CCACCGGCCAGCAGGTCAACATCTCCACGCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACG 14 0.35000000000000003 No Hit CTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAGCAACCCGCTCAGGACGCAGGCC 14 0.35000000000000003 No Hit GACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCA 13 0.325 No Hit ACACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGAC 13 0.325 No Hit CAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTG 13 0.325 No Hit TCTGTTTGTGAAGCGGTTTATGTTGGAGCAGTTGGCTCTCTACCAATCAAGGCAACCACCACCTGTTGACCCCCA 13 0.325 No Hit GGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCA 12 0.3 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAA 12 0.3 No Hit CGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCC 12 0.3 No Hit GAACGACCAAGACGCCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCG 12 0.3 No Hit ATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACCGG 11 0.27499999999999997 No Hit ATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACGGCGGCGCCAACGAC 11 0.27499999999999997 No Hit AGTGCTGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACGGCGGCGCCAACGACTCC 11 0.27499999999999997 No Hit AGGTCAACATCTCCACGGGGTCGTCAATGCCACCGTCGACAACACGCTCT 11 0.27499999999999997 No Hit TGCTGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACACGT 11 0.27499999999999997 No Hit AAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTTCCACGGGCGT 11 0.27499999999999997 No Hit TCGTCAATGCCACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTG 10 0.25 No Hit CGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTCAACTCGCTTTCGGACAGCCAGAAGAACTCGCTGGTGC 10 0.25 No Hit TGCGTCCTCTGCTGGGGGCTGTGACGTTTGCCCATGAGACTGCGATTCTC 10 0.25 No Hit CGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCCTCTGCTGGGGGC 10 0.25 No Hit CTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAG 10 0.25 No Hit ACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGA 10 0.25 No Hit AGGGCCCAACAGCGGCTCCGGCACCGGCTGCTGCGTTCCACGGCGTCGCCGCCCCAAATCGACAAC 10 0.25 No Hit GATCACTCTCGCATTTGTCCTCGCTGATAGCTAGAGTTTCACGATTACAC 10 0.25 No Hit ATTGGTAACGTCAAAACCGGCCTTGAGGATGAAAAGATTTCAAGCTGTGT 10 0.25 No Hit GCTTTCGGACAGCCAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGG 10 0.25 No Hit CCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCAGACG 9 0.22499999999999998 No Hit TCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTGGCC 9 0.22499999999999998 No Hit ACCACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATC 9 0.22499999999999998 No Hit GGCTGCTGCGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAAC 9 0.22499999999999998 No Hit TCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTC 9 0.22499999999999998 No Hit CGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAGCAACC 8 0.2 No Hit TATAACTAGCCACAGCTAAGCTCGCAAGCTCTCCACCAGATAGATCACTC 8 0.2 No Hit GGCACCGGCAGCCGGAACGACCAAGACGCCAACATAACAGGCGTGCTAGC 8 0.2 No Hit TGCGTCCTCTGCTGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGG 8 0.2 No Hit CAGAAGAACTCGCTGGTGCAGTTCCACGTGCTGTCCACGGCGGTGCCATGTCGCAGTTCGACACCG 8 0.2 No Hit TGGCGTCCTGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGC 8 0.2 No Hit TGTTCGCGCCCACGGACAACGCGTTCACGAGCCTGGCTTCCGGCACGCTC 8 0.2 No Hit GATCATTTTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGT 8 0.2 No Hit GACCAAGACGCCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAA 8 0.2 No Hit AATGGAAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGATCACGCGTCGGCGC 8 0.2 No Hit GGGTGGCGGCGTCGTCGCGGTGGCCATGGCATTGGCGTCCTGCGTCCTCT 8 0.2 No Hit CCAGCAGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACA 8 0.2 No Hit TCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGTCAAC 7 0.17500000000000002 No Hit AAGACGCCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACG 7 0.17500000000000002 No Hit ACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGG 7 0.17500000000000002 No Hit AGGTCAACATCTCCACGGGGGTCGTCAATGCCACCGTCGACAACACGCTCTTCACC 7 0.17500000000000002 No Hit CGGCTGCTGCGTTCCACGGGCGTCGCCGCCCAATCGACAACCAGCTCAAC 6 0.15 No Hit CACCGTCGACAACACGCTCTTCACCGGCGACCAGCTCGTGGTCTACCAGGT 6 0.15 No Hit GCACCGGCAGCCGGAACGACCAAGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGGCTGCTGCGTT 6 0.15 No Hit CTCAGGACGCAGGCCGGGAGCAGCTCCCCGGGGGAGTACCCGCTCAACGTC 6 0.15 No Hit CAGACGGGCGGGCTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGAG 6 0.15 No Hit TTCCACGTGCTGTCCACGGCGGTGCCCATGTCGCAGTTCGACACCGTGAG 6 0.15 No Hit GATCAGACACAAGACGACGACTGCCTGGAGGTGTACAAAGACAAGGATGT 6 0.15 No Hit ACACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCAAATCGACA 6 0.15 No Hit TGGCGCTTTGTTTATTTGGTCAACCCGAGCTGATAAGCTTTGACCGTGAT 6 0.15 No Hit TGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACACGTCG 6 0.15 No Hit GGCGATCACGGCGTCGGCGCAGGGCCCAACGGCGGCGCCAACGACTCCAGC 6 0.15 No Hit ACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCG 6 0.15 No Hit AGGAAGAAAACATCTCATCATCCGTCGGCATCCTCCTATGGAAGCAAATCTAACCAAGGGAACCAATTTGATG 6 0.15 No Hit TGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATCTCGG 6 0.15 No Hit GCACCGGCAGCCGGAACGACCAAGACGCCAACATAACAGGCGTGCTAGCG 5 0.125 No Hit GGAACGACCAAGACGACCACAGTATAGCTGGTTGCCTGATTGTTTCTGCA 5 0.125 No Hit CTGCTGCGTTCCACGGGCGTCGCCGCCCAATCGACAACCAGCTCAACAGC 5 0.125 No Hit ACCAATGCTACGTGCTCTGCTTGCATCTCACTCCAATCTTGTTATAACTA 5 0.125 No Hit TGCTGGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACAC 5 0.125 No Hit AGTACCGCTCAACGTCACCGCCACCGGCCAGCAGGTCAACATCTCCACGG 5 0.125 No Hit CACCGGCAGCCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCG 5 0.125 No Hit TCCTGCGTCCTCTGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTC 5 0.125 No Hit TGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGATTCTCGGTCTACACGTCGAGTTTTTTTTGGTCAC 5 0.125 No Hit ACGTTCATCCGGCTGCTGCGTTCCACGGCGTCGCCGCCCCAATCGACAAC 5 0.125 No Hit TGCTCGTGATCTCAGCGGCGATCACGGCGTCGGCGCAGGGCCCAACGGCGGCGCCAACGACTCC 5 0.125 No Hit CAGACGGGCGGGCGTCACGGTGTTCGCGCCCACGGACAACGCGTTCACGA 5 0.125 No Hit TGCTGGGGGCTGTGACGTTGCCCATGAGACTGCGAGTTCTCGGTCTACAC 5 0.125 No Hit CGTTCCACGGGCGTCGCCGCCCCAAATCGACAACCAGCTCAACAGCTCCCAGACGGGGCTCAGGAC 5 0.125 No Hit CGTTCCACGGGCGTCGCCGCCCAAATCGACAACCAGCTCAACAGCTCCCAGACGGGGCTCAGGAC 5 0.125 No Hit ACGATTACACCACCAGAATGGAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGATCACGG 5 0.125 No Hit ACGATTACACCACCAGAATGGAAGCCATGCAGAGATCATTTCTAGTGCTGCTCGTGATCTCAGCGGCGATCACGG 5 0.125 No Hit AGGTCAACCAGGTGCTGCTGCCCATGGCCATCGCCGGGAAGGAGGCGGAC 5 0.125 No Hit CCGGAACGACCAAGACGACCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTTCAACACGTTCATCCGG 5 0.125 No Hit AACGACCAAGACGCCAACATAACAGGCGTGCTAGCGAAAGCCGGGCAGTT 5 0.125 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-14 0.0 0.0 0.0 0.0 0.0 15-19 0.0 0.0 0.0 0.0 0.0 20-24 0.0 0.0 0.0 0.0 0.0 25-29 0.0 0.0 0.0 0.0 0.0 30-34 0.0 0.0 0.0 0.0 0.0 35-39 0.0 0.0 0.0 0.0 0.0 40-44 0.0 0.0 0.0 0.0 0.0 45-49 0.0 0.0 0.0 0.0 0.0 50-54 0.0 0.0 0.0 0.0 0.0 55-59 0.0 0.0 0.0 0.0 0.0 60-64 0.0 0.0 0.0 0.0 0.0 65-69 0.0 0.0 0.0 0.0 0.0 70-74 0.0 0.0 0.0 0.0 0.0 75-79 0.0 0.0 0.0 0.0 0.0 80-84 0.0 0.0 0.0 0.0 0.0 85-89 0.0 0.0 0.0 0.0 0.0 90-94 0.0 0.0 0.0 0.0 0.0 95-99 0.0 0.0 0.0 0.0 0.0 100-104 0.0 0.0 0.0 0.0 0.0 105-109 0.0 0.0 0.0 0.0 0.0 110-114 0.0 0.0 0.0 0.0 0.0 115-119 0.0 0.0 0.0 0.0 0.0 120-124 0.0 0.0 0.0 0.0 0.0 125-129 0.0 0.0 0.0 0.0 0.0 130-134 0.0 0.0 0.0 0.0 0.0 135-139 0.0 0.0 0.0 0.0 0.0 140-144 0.0 0.0 0.0 0.0 0.0 145-149 0.0 0.0 0.0 0.0 0.0 150-154 0.0 0.0 0.0 0.0 0.0 155-159 0.0 0.0 0.0 0.0 0.0 160-164 0.0 0.0 0.0 0.0 0.0 165-169 0.0 0.0 0.0 0.0 0.0 170-174 0.0 0.0 0.0 0.0 0.0 175-179 0.0 0.0 0.0 0.0 0.0 180-184 0.0 0.0 0.0 0.0 0.0 185-189 0.0 0.0 0.0 0.0 0.0 190-194 0.0 0.0 0.0 0.0 0.0 195-199 0.0 0.0 0.0 0.0 0.0 200-204 0.0 0.0 0.0 0.0 0.0 205-209 0.0 0.0 0.0 0.0 0.0 210-214 0.0 0.0 0.0 0.0 0.0 215-219 0.0 0.0 0.0 0.0 0.0 220-224 0.0 0.0 0.0 0.0 0.0 225-229 0.0 0.0 0.0 0.0 0.0 230-234 0.0 0.0 0.0 0.0 0.0 235-239 0.0 0.0 0.0 0.0 0.0 240-244 0.0 0.0 0.0 0.0 0.0 245-249 0.0 0.0 0.0 0.0 0.0 250-254 0.0 0.0 0.0 0.0 0.0 255-259 0.0 0.0 0.0 0.0 0.0 260-264 0.0 0.0 0.0 0.0 0.0 265-267 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCACCA 5 9.2938065E-4 2424.0 235-237 GGTCACC 5 9.2938065E-4 2424.0 235-237 TAAATAC 5 0.001858591 1818.0 220-224 AAATACG 5 0.001858591 1818.0 220-224 GTGGTCA 5 0.0030973675 1454.4 230-234 GCTCGTG 50 0.0 727.2 230-234 ATAAATA 10 7.484533E-5 606.0 215-219 TATATAT 10 1.5469799E-4 484.8 180-184 TGGTCAC 55 0.0016695117 220.36365 235-237 GGACGCG 25 0.0019275515 207.77144 125-129 GGAAGAA 25 0.0070176045 138.51428 115-119 CGTTAAT 20 1.3491613E-4 136.35 135-139 CCGTTGT 20 1.3491613E-4 136.35 145-149 TCGTTAA 20 1.3491613E-4 136.35 135-139 ATCGTTA 20 1.3491613E-4 136.35 135-139 CGTTGTA 20 1.3491613E-4 136.35 145-149 GTTGTAC 20 1.3491613E-4 136.35 145-149 CCGTATC 20 1.6509338E-4 129.85715 130-134 CGTATCG 20 1.6509338E-4 129.85715 130-134 TCCGTAT 20 1.6509338E-4 129.85715 130-134 >>END_MODULE Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346187 spots for ERR1942997.sra Written 1346187 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra Read 1346179 spots for ERR1942997.sra Written 1346179 spots for ERR1942997.sra SRR ids: ['ERR1942997.sra'] extra args: ['--split-files', '--defline-qual', '+'] tempdir: /tmp/pfd_d6sb4e_f ERR1942997.sra spots: 26923588 blocks: [[1, 1346179], [1346180, 2692358], [2692359, 4038537], [4038538, 5384716], [5384717, 6730895], [6730896, 8077074], [8077075, 9423253], [9423254, 10769432], [10769433, 12115611], [12115612, 13461790], [13461791, 14807969], [14807970, 16154148], [16154149, 17500327], [17500328, 18846506], [18846507, 20192685], [20192686, 21538864], [21538865, 22885043], [22885044, 24231222], [24231223, 25577401], [25577402, 26923588]] ERR1942997 file size 7056082 ERR1942997 completed basic pipeline successfully skewer v0.2.2 [April 4, 2016] COMMAND LINE: skewer -f sanger -l 18 -q 10 -k inf -t 20 -o ERR1942997 ERR1942997_1.fastq Input file: ERR1942997_1.fastq trimmed: ERR1942997-trimmed.fastq Parameters used: -- 3' end adapter sequence (-x): AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -- maximum error ratio allowed (-r): 0.100 -- maximum indel error ratio allowed (-d): 0.030 -- end quality threshold (-q): 10 -- minimum read length allowed after trimming (-l): 18 -- file format (-f): Sanger/Illumina 1.8+ FASTQ -- minimum overlap length for adapter detection (-k): inf -- number of concurrent threads (-t): 20 Tue Dec 10 00:50:11 2024 >> started Tue Dec 10 00:50:26 2024 >> done (15.648s) 26923588 reads processed; of these: 244 ( 0.00%) short reads filtered out after trimming by size control 52 ( 0.00%) empty reads filtered out after trimming by size control 26923292 (100.00%) reads available; of these: 1147851 ( 4.26%) trimmed reads available after processing 25775441 (95.74%) untrimmed reads available after processing Length distribution of reads after trimming: length count percentage 18 352 0.00% 19 546 0.00% 20 882 0.00% 21 1516 0.01% 22 1847 0.01% 23 2408 0.01% 24 5643 0.02% 25 25411 0.09% 26 25718 0.10% 27 26344 0.10% 28 26655 0.10% 29 27407 0.10% 30 27636 0.10% 31 28043 0.10% 32 28511 0.11% 33 29303 0.11% 34 29526 0.11% 35 31093 0.12% 36 32341 0.12% 37 31843 0.12% 38 33044 0.12% 39 33133 0.12% 40 33869 0.13% 41 35258 0.13% 42 36290 0.13% 43 37809 0.14% 44 38389 0.14% 45 41077 0.15% 46 42534 0.16% 47 44761 0.17% 48 46164 0.17% 49 47838 0.18% 50 50851 0.19% 51 54681 0.20% 52 55904 0.21% 53 59885 0.22% 54 63116 0.23% 55 66319 0.25% 56 70963 0.26% 57 75993 0.28% 58 78723 0.29% 59 82750 0.31% 60 90666 0.34% 61 93547 0.35% 62 100104 0.37% 63 113416 0.42% 64 112708 0.42% 65 112586 0.42% 66 121551 0.45% 67 129856 0.48% 68 135015 0.50% 69 151271 0.56% 70 155960 0.58% 71 161688 0.60% 72 165920 0.62% 73 170692 0.63% 74 185469 0.69% 75 188588 0.70% 76 196921 0.73% 77 208594 0.77% 78 214593 0.80% 79 220767 0.82% 80 224168 0.83% 81 231479 0.86% 82 245235 0.91% 83 244303 0.91% 84 261630 0.97% 85 262472 0.97% 86 274526 1.02% 87 276147 1.03% 88 274633 1.02% 89 281909 1.05% 90 301475 1.12% 91 300328 1.12% 92 295936 1.10% 93 300934 1.12% 94 314626 1.17% 95 319443 1.19% 96 323259 1.20% 97 323671 1.20% 98 340673 1.27% 99 334572 1.24% 100 333170 1.24% 101 335202 1.25% 102 329122 1.22% 103 325332 1.21% 104 323034 1.20% 105 329266 1.22% 106 321179 1.19% 107 322495 1.20% 108 325943 1.21% 109 327495 1.22% 110 320716 1.19% 111 320173 1.19% 112 313753 1.17% 113 302753 1.12% 114 298158 1.11% 115 304889 1.13% 116 296205 1.10% 117 296965 1.10% 118 299550 1.11% 119 292032 1.08% 120 297582 1.11% 121 276944 1.03% 122 274176 1.02% 123 269293 1.00% 124 270612 1.01% 125 258108 0.96% 126 255657 0.95% 127 244668 0.91% 128 242722 0.90% 129 238224 0.88% 130 229913 0.85% 131 224739 0.83% 132 216167 0.80% 133 211429 0.79% 134 211890 0.79% 135 211323 0.78% 136 207221 0.77% 137 201680 0.75% 138 202633 0.75% 139 191134 0.71% 140 194646 0.72% 141 189953 0.71% 142 172170 0.64% 143 167101 0.62% 144 167467 0.62% 145 164099 0.61% 146 161832 0.60% 147 152889 0.57% 148 148151 0.55% 149 137466 0.51% 150 135805 0.50% 151 132891 0.49% 152 130875 0.49% 153 130769 0.49% 154 127032 0.47% 155 118919 0.44% 156 115753 0.43% 157 114276 0.42% 158 106939 0.40% 159 106081 0.39% 160 101677 0.38% 161 101012 0.38% 162 102291 0.38% 163 101411 0.38% 164 96318 0.36% 165 91466 0.34% 166 84920 0.32% 167 82746 0.31% 168 80506 0.30% 169 78724 0.29% 170 72369 0.27% 171 71340 0.26% 172 68534 0.25% 173 66302 0.25% 174 62822 0.23% 175 60251 0.22% 176 59011 0.22% 177 59495 0.22% 178 58592 0.22% 179 54492 0.20% 180 51885 0.19% 181 48878 0.18% 182 46647 0.17% 183 45611 0.17% 184 43886 0.16% 185 41774 0.16% 186 40601 0.15% 187 39148 0.15% 188 37276 0.14% 189 36027 0.13% 190 34500 0.13% 191 33608 0.12% 192 31799 0.12% 193 30412 0.11% 194 29312 0.11% 195 28343 0.11% 196 27088 0.10% 197 25722 0.10% 198 24851 0.09% 199 23438 0.09% 200 22634 0.08% 201 22019 0.08% 202 20937 0.08% 203 20234 0.08% 204 19392 0.07% 205 19027 0.07% 206 18143 0.07% 207 17573 0.07% 208 16299 0.06% 209 15333 0.06% 210 14526 0.05% 211 13863 0.05% 212 13541 0.05% 213 13029 0.05% 214 12369 0.05% 215 11599 0.04% 216 10944 0.04% 217 10418 0.04% 218 9857 0.04% 219 9409 0.03% 220 8660 0.03% 221 8246 0.03% 222 7854 0.03% 223 7310 0.03% 224 7025 0.03% 225 6662 0.02% 226 6377 0.02% 227 5853 0.02% 228 5172 0.02% 229 4970 0.02% 230 4810 0.02% 231 4474 0.02% 232 4097 0.02% 233 3978 0.01% 234 3759 0.01% 235 3519 0.01% 236 3122 0.01% 237 2982 0.01% 238 2842 0.01% 239 2547 0.01% 240 2508 0.01% 241 2237 0.01% 242 2077 0.01% 243 1964 0.01% 244 1797 0.01% 245 1680 0.01% 246 1582 0.01% 247 1391 0.01% 248 1332 0.00% 249 1189 0.00% 250 1080 0.00% 251 1080 0.00% 252 942 0.00% 253 834 0.00% 254 810 0.00% 255 718 0.00% 256 673 0.00% 257 609 0.00% 258 552 0.00% 259 483 0.00% 260 440 0.00% 261 369 0.00% 262 385 0.00% 263 351 0.00% 264 301 0.00% 265 274 0.00% 266 264 0.00% 267 241 0.00% 268 214 0.00% 269 232 0.00% 270 209 0.00% 271 160 0.00% 272 183 0.00% 273 144 0.00% 274 119 0.00% 275 116 0.00% 276 84 0.00% 277 80 0.00% 278 78 0.00% 279 69 0.00% 280 63 0.00% 281 47 0.00% 282 52 0.00% 283 47 0.00% 284 41 0.00% 285 30 0.00% 286 33 0.00% 287 21 0.00% 288 23 0.00% 289 18 0.00% 290 19 0.00% 291 12 0.00% 292 15 0.00% 293 5 0.00% 294 11 0.00% 295 9 0.00% 296 5 0.00% 297 5 0.00% 298 3 0.00% 299 5 0.00% 300 6 0.00% 301 4 0.00% 302 4 0.00% 303 4 0.00% 304 2 0.00% 305 5 0.00% 306 2 0.00% 307 3 0.00% 308 0 0.00% 309 3 0.00% 310 2 0.00% 311 0 0.00% 312 4 0.00% 313 4 0.00% 314 0 0.00% 315 3 0.00% 316 2 0.00% 317 2 0.00% 318 1 0.00% 319 2 0.00% 320 1 0.00% 321 2 0.00% 322 2 0.00% 323 2 0.00% 324 0 0.00% 325 2 0.00% 326 1 0.00% 327 5 0.00% 328 3 0.00% 329 1 0.00% 330 2 0.00% 331 1 0.00% 332 1 0.00% 333 2 0.00% 334 0 0.00% 335 2 0.00% 336 3 0.00% 337 0 0.00% 338 0 0.00% 339 1 0.00% 340 1 0.00% 341 1 0.00% 342 2 0.00% 343 1 0.00% 344 2 0.00% 345 1 0.00% 346 1 0.00% 347 0 0.00% 348 1 0.00% 349 5 0.00% 350 2 0.00% 351 1 0.00% 352 3 0.00% 353 1 0.00% 354 0 0.00% 355 1 0.00% 356 0 0.00% 357 2 0.00% 358 2 0.00% 359 2 0.00% 360 1 0.00% 361 2 0.00% 362 2 0.00% 363 0 0.00% 364 1 0.00% 26923292 reads passed initial QC criterion=sequence-density sequence-density=0.95 sequence-density-rank=1 fanout-score=0.00 fanout-score-rank=38 prefix-density=0.00 prefix-fanout=1.0 sequence=ACAGCTATCACACACAGGCAAAACACAGCTGATTCGTGTACTCGATCTCCCCAGCAAGTTAAGGCCACCATGTCGAGCGGCTGCGGCAACTGCGACTGCGCTGACAAGACCCAGTGTGTGAAGAAGGGAAACGGCTACGGCATCGTCATGGTTGACACCGAGAAGAGCCACTTCGAGGTGCAGGAGTCCGCGGCGGAGAACGACGGCAAGTGCAAGTGCGG criterion=fanout-score sequence-density=0.04 sequence-density-rank=33 fanout-score=28.93 fanout-score-rank=1 prefix-density=0.39 prefix-fanout=2.6 sequence=GAGAAGCTGATAGGGAGGATTGTGAAATGGCTCAAGGTCGGTGGGCACATATTCATCAGGGAGTCCTGCTTCCACCAGTCTGGAGATTCCAAGAGGAAAGTGAACCCAACACACTACCGGGAGCCAAGGTTTTATACCAAGATATTTAAAGAATGCAGTTCCTATGATCAAGAAGGGAACTCTTTTGAGCTTTCCCTTGTAACTTCCAAGTGCATTGGAGCTTATGTGAAAAGCAAGAAAAACCAAAACCAGATATGCTGGCTATGGGAAAAGGTTAAGTCAACAGATGACAAGGGATTTCAGAGATTCTTGGACAATGTGCAGTACAAATCCAGCGGAATCTTGCGTTATGAACGTGTATTTGGAGAGGGTTATGTTAGCACTGGTGGATTCGAAACCACAAAGGAGTTTGTGGACAAGCTGGATCTTAAACCTGGCCAGAAGGTGCTTGATGTTGGGTGTGGAATTGGAGGAGGCGAC Started job on | Dec 10 00:50:41 Started mapping on | Dec 10 00:50:41 Finished on | Dec 10 00:51:31 Mapping speed, Million of reads per hour | 1938.48 Number of input reads | 26923292 Average input read length | 112 UNIQUE READS: Uniquely mapped reads number | 22104950 Uniquely mapped reads % | 82.10% Average mapped length | 110.32 Number of splices: Total | 7344402 Number of splices: Annotated (sjdb) | 6742262 Number of splices: GT/AG | 7040701 Number of splices: GC/AG | 90956 Number of splices: AT/AC | 4453 Number of splices: Non-canonical | 208292 Mismatch rate per base, % | 0.41% Deletion rate per base | 0.29% Deletion average length | 1.16 Insertion rate per base | 0.23% Insertion average length | 1.20 MULTI-MAPPING READS: Number of reads mapped to multiple loci | 1038598 % of reads mapped to multiple loci | 3.86% Number of reads mapped to too many loci | 788357 % of reads mapped to too many loci | 2.93% UNMAPPED READS: % of reads unmapped: too many mismatches | 0.00% % of reads unmapped: too short | 9.62% % of reads unmapped: other | 1.49% CHIMERIC READS: Number of chimeric reads | 0 % of chimeric reads | 0.00% N_unmapped 3779744 3779744 3779744 N_multimapping 1038598 1038598 1038598 N_noFeature 862154 1016050 21495309 N_ambiguous 520534 75685 2283 UnstrandedReadsAssigned:20722262 PositiveStrandReadsAssigned:21013215 NegativeStrandReadsAssigned:607358 Dataset is classified positive stranded MeadianReadLen=109 20thPercentileLength=84 echo kmer=79 ERR1942997 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31 [quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20 [index] k-mer length: 31 [index] number of targets: 52,972 [index] number of k-mers: 66,720,672 [index] number of equivalence classes: 111,837 [quant] running in single-end mode [quant] will process file 1: ERR1942997-trimmed.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 26,923,292 reads, 22,201,521 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,205 rounds 52973 ERR1942997.ke.tsv 35125 ERR1942997.se.tsv 88098 total ==> ERR1942997.ke.tsv <== target_id length eff_length est_counts tpm PNS24245 936 837 21.8988 1.76953 PNS24247 1044 945 72.9166 5.21864 PNS24249 1928 1829 0 0 PNS24246 1044 945 72.9166 5.21864 PNS24248 1044 945 72.9166 5.21864 PNS24244 1471 1372 292.351 14.4116 PNS24243 293 194 0 0 KQK14069 1603 1504 7742.69 348.182 KQK14071 474 375 78.4926 14.1566 ==> ERR1942997.se.tsv <== BRADI_1g14170v3 7682 BRADI_1g53295v3 61 BRADI_1g59795v3 668 BRADI_1g07683v3 0 BRADI_1g00485v3 24 BRADI_1g20270v3 1109 BRADI_1g74790v3 513 BRADI_1g09890v3 48 BRADI_1g77505v3 646 BRADI_1g48960v3 0 ERR1942997 completed mapping pipeline successfully