Starting /dee2/code/volunteer_pipeline.sh SRR6322432 current disk space = 1543150931968 free memory = 1602958472 SRR6322432 SRAfilesize dc4457fa49e4d0a827333ac34dfed0ba SRR6322432.sra SRR6322432.sra file validated SRR6322432 is single end SRR6322432 is conventional basespace SRR6322432 read1 length is 50 nt ##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR6322432_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.50875 32.0 32.0 32.0 32.0 32.0 2 30.505 32.0 32.0 32.0 32.0 32.0 3 32.16625 32.0 32.0 37.0 27.0 37.0 4 36.0775 37.0 37.0 37.0 32.0 37.0 5 35.98625 37.0 37.0 37.0 32.0 37.0 6 40.13075 41.0 41.0 41.0 37.0 41.0 7 37.9025 41.0 37.0 41.0 32.0 41.0 8 40.04325 41.0 41.0 41.0 37.0 41.0 9 38.42425 41.0 37.0 41.0 32.0 41.0 10 40.3245 41.0 41.0 41.0 37.0 41.0 11 40.55675 41.0 41.0 41.0 41.0 41.0 12 40.36725 41.0 41.0 41.0 41.0 41.0 13 39.659 41.0 41.0 41.0 37.0 41.0 14 38.09 41.0 37.0 41.0 32.0 41.0 15 39.6525 41.0 41.0 41.0 37.0 41.0 16 39.58675 41.0 41.0 41.0 37.0 41.0 17 40.3675 41.0 41.0 41.0 41.0 41.0 18 39.69675 41.0 41.0 41.0 37.0 41.0 19 40.401 41.0 41.0 41.0 41.0 41.0 20 40.068 41.0 41.0 41.0 37.0 41.0 21 40.2705 41.0 41.0 41.0 41.0 41.0 22 40.472 41.0 41.0 41.0 41.0 41.0 23 39.8205 41.0 41.0 41.0 37.0 41.0 24 37.06725 41.0 37.0 41.0 27.0 41.0 25 37.24925 41.0 37.0 41.0 27.0 41.0 26 37.1665 41.0 37.0 41.0 27.0 41.0 27 39.334 41.0 41.0 41.0 37.0 41.0 28 37.173 41.0 37.0 41.0 27.0 41.0 29 37.50325 41.0 37.0 41.0 27.0 41.0 30 38.08225 41.0 37.0 41.0 32.0 41.0 31 33.5265 37.0 27.0 41.0 12.0 41.0 32 34.109 37.0 27.0 41.0 12.0 41.0 33 34.912 37.0 32.0 41.0 22.0 41.0 34 30.193 37.0 22.0 41.0 12.0 41.0 35 37.9205 41.0 37.0 41.0 32.0 41.0 36 38.92925 41.0 41.0 41.0 37.0 41.0 37 33.34425 37.0 27.0 41.0 12.0 41.0 38 38.45275 41.0 37.0 41.0 32.0 41.0 39 39.678 41.0 41.0 41.0 37.0 41.0 40 39.24575 41.0 41.0 41.0 37.0 41.0 41 39.09525 41.0 41.0 41.0 37.0 41.0 42 39.59 41.0 41.0 41.0 37.0 41.0 43 39.055 41.0 41.0 41.0 37.0 41.0 44 39.81625 41.0 41.0 41.0 37.0 41.0 45 39.43575 41.0 41.0 41.0 37.0 41.0 46 38.612 41.0 41.0 41.0 32.0 41.0 47 37.322 41.0 37.0 41.0 27.0 41.0 48 39.3755 41.0 41.0 41.0 37.0 41.0 49 39.6525 41.0 41.0 41.0 37.0 41.0 50 38.155 41.0 37.0 41.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 25 1.0 26 9.0 27 7.0 28 24.0 29 32.0 30 48.0 31 49.0 32 81.0 33 100.0 34 131.0 35 194.0 36 300.0 37 500.0 38 735.0 39 1115.0 40 674.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.50237678258694 8.831623717788341 4.878658994245684 49.787340505379035 2 20.78492124967725 9.346759617867287 45.23625096824168 24.632068164213788 3 21.8 12.325 27.275 38.6 4 28.225 16.475 23.45 31.85 5 28.775000000000002 23.025000000000002 26.224999999999998 21.975 6 24.875 27.3 26.05 21.775 7 21.125 24.25 37.625 17.0 8 19.85 19.875 33.45 26.825 9 20.175 18.7 37.325 23.799999999999997 10 24.0 27.700000000000003 28.325 19.975 11 26.325 21.925 24.575 27.175 12 24.675 19.0 28.799999999999997 27.525 13 24.825 24.2 25.75 25.224999999999998 14 23.625 22.5 27.250000000000004 26.625 15 25.775 22.5 26.8 24.925 16 25.25 22.375 24.65 27.725 17 26.1 21.8 27.900000000000002 24.2 18 24.75 23.25 26.650000000000002 25.35 19 25.8 20.175 25.650000000000002 28.375 20 26.974999999999998 21.025 27.525 24.474999999999998 21 25.650000000000002 21.05 26.700000000000003 26.6 22 25.7 22.55 24.95 26.8 23 26.0 22.175 25.575 26.25 24 25.575 22.5 24.75 27.175 25 25.95 22.475 25.424999999999997 26.150000000000002 26 26.174999999999997 21.95 26.275 25.6 27 25.224999999999998 22.275 26.150000000000002 26.35 28 27.175 23.225 24.875 24.725 29 24.95 22.325 27.425 25.3 30 24.474999999999998 23.175 27.875 24.474999999999998 31 27.175 22.625 23.849999999999998 26.35 32 26.5 23.575 26.0 23.925 33 25.05 21.475 25.25 28.225 34 26.575 20.75 24.0 28.675 35 23.599999999999998 22.1 26.150000000000002 28.15 36 24.575 21.3 26.8 27.325 37 27.625 20.175 26.375 25.825 38 26.625 22.2 23.775 27.400000000000002 39 24.925 21.0 26.35 27.725 40 25.3 23.674999999999997 25.900000000000002 25.124999999999996 41 24.5 22.225 25.6 27.675 42 25.1 22.5 24.425 27.975 43 26.400000000000002 20.849999999999998 26.650000000000002 26.1 44 25.8 21.55 27.075 25.575 45 25.174999999999997 22.3 25.8 26.724999999999998 46 25.775 20.525 25.974999999999998 27.725 47 25.924999999999997 23.150000000000002 25.650000000000002 25.275 48 24.55 22.1 26.825 26.525 49 25.224999999999998 22.650000000000002 26.450000000000003 25.674999999999997 50 26.575 22.0 24.25 27.175 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 1.0 7 0.5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 1.0 22 2.0 23 2.5 24 3.0 25 4.0 26 5.0 27 7.5 28 10.0 29 13.5 30 17.0 31 23.5 32 30.0 33 44.5 34 59.0 35 87.5 36 116.0 37 123.5 38 131.0 39 157.0 40 183.0 41 214.5 42 246.0 43 256.0 44 266.0 45 280.5 46 295.0 47 323.0 48 351.0 49 317.0 50 283.0 51 281.5 52 280.0 53 272.0 54 264.0 55 252.0 56 240.0 57 225.0 58 210.0 59 206.5 60 203.0 61 181.0 62 159.0 63 144.0 64 129.0 65 120.5 66 112.0 67 119.0 68 126.0 69 120.0 70 114.0 71 85.0 72 56.0 73 54.0 74 52.0 75 39.5 76 27.0 77 21.0 78 15.0 79 12.0 80 9.0 81 6.5 82 4.0 83 2.5 84 1.0 85 1.0 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.075 2 3.175 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.75 #Duplication Level Percentage of deduplicated Percentage of total 1 90.29154518950438 77.425 2 6.618075801749271 11.35 3 1.8075801749271136 4.65 4 0.3498542274052478 1.2 5 0.43731778425655976 1.875 6 0.23323615160349853 1.2 7 0.08746355685131195 0.525 8 0.08746355685131195 0.6 9 0.0 0.0 >10 0.08746355685131195 1.175 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC 23 0.575 TruSeq Adapter, Index 2 (100% over 50bp) CTCATCAAAATACTCCGTCAGACCAGCTTGTGACCTCACTTGCGTAAGTG 12 0.3 No Hit GTATGATTAACAGCTGCCCTCGACGAAGAAGTCCATTGAACACATTGCGG 12 0.3 No Hit CTGGTATCCTTCACTCTCCGCCTTCTTTAAAACGACATAGTTTTGTGGTA 8 0.2 No Hit CTCTTTTATTCCAAGGTTTTAACAACTAGGGTGGGTCTCACATGACCATG 8 0.2 No Hit GTCCTTCCTGAGGTTCGATTGGTAGGAAGGGTTGTTTCTGCTGTTGTTGG 8 0.2 No Hit CTCCGATCGGGTAACTCTGGCAGCTGCTTTGGGGGAAATTCGGAGTCAAC 7 0.17500000000000002 No Hit CCTTGGATCACGTACACCACGCTATGGGCATTAATGTTCCAGAATGGTGA 7 0.17500000000000002 No Hit CTCCAAACCATTCAAACTTCCACCAATTGATCGCCCAACCTGAGACCGCC 7 0.17500000000000002 No Hit GTCTGCTCTTGCTGCTGAGGATACAGGAGACTGCCCTGCTGCCCTTGTCC 6 0.15 No Hit CGGGAAATTCTGACCGTTGAGGCGTGCGATACTGCCAGCACGTGGGTTGT 6 0.15 No Hit GTCCGCACTCCTGTGACTGGGCCCCGAACCGGCGCGAAGGGATCTGACCT 6 0.15 No Hit CTCTCATCTTGTTGTTGATGTGGGCACGGCTGCTCCGGCTGAACCGACCA 6 0.15 No Hit GGGATGATTAATAGTTGCCCCGAACGAAGAAGGCCATTGAACACATTTTG 6 0.15 No Hit CTCCAAACCGTTGCGACTCGATTGTCCTTCCTGAGGTTCGATTGGTAGGA 6 0.15 No Hit CTTGTGTAAACTGGTGGACTCTCTGGTGCACATCTCCCAACTTTTGGCTT 6 0.15 No Hit GTGAAAATGAGCTTGCTCCTCTCGCTGGTAGGAACCCTGTGATTGTTGCT 6 0.15 No Hit CTTTATTTCACCCTAATAGTTATCATACTAACTCATTCACTCCTGTGCCT 5 0.125 No Hit CTCATCTTGTTGTTGATGTGGGCACGGCTGCTCCGGCTGAACCGACCATG 5 0.125 No Hit CTTCACTCTCCGCCTTCTTTAAAACGACATAGTTTTGTGGTATGATTAAC 5 0.125 No Hit GGGGTGTTGTGGTATCGAGGTAATAAAAGGCCTCGAGGCTCGATAACACG 5 0.125 No Hit GTCTGCATCTCCGTCGGGCTGCACCGCTGCAGGAAATACTCCCTACACTG 5 0.125 No Hit CTCCTCCAAACCATTCAAACTTCCACCAATTGATCGCCCAACCTGAGACC 5 0.125 No Hit CTCTACAGTTCTCATATATATTAGTTCATTCGCTCTGATGCCTTGCGACT 5 0.125 No Hit GTTCGATTGGTAGGAAGGGTTGTTTCTGCTGTTGTTGGGTGACGACGGGC 5 0.125 No Hit CTCGATAACACGACGTATGACAGATACGCCGGCACAACGAAATTGCTCAT 5 0.125 No Hit CGTCATTCTGATTCTGAATTATTCGTGATGTTTGTTCATTGATACCAAAG 5 0.125 No Hit GTGGGATGATTAATAGTTGCCCCGAACGAAGAAGGCCATTGAACACATTT 5 0.125 No Hit CTGTGATTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCA 5 0.125 No Hit CTTGAAAGCGATATACTGGTATCCTTCACTCTCCGCCTTCTTTAAAACGA 5 0.125 No Hit GGTATGATTAACAGCTGCCCTCGACGAAGAAGTCCATTGAACACATTGCG 5 0.125 No Hit CCTTGTGTAAACTGGTGGACTCTCTGGTGCACATCTCCCAACTTTTGGCT 5 0.125 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 0.0 0.0 23 0.0 0.0 0.0 0.0 0.0 24 0.0 0.0 0.0 0.0 0.0 25 0.0 0.0 0.0 0.0 0.0 26 0.0 0.0 0.0 0.0 0.0 27 0.0 0.0 0.0 0.0 0.0 28 0.0 0.0 0.0 0.0 0.0 29 0.0 0.0 0.0 0.0 0.0 30 0.0 0.0 0.0 0.0 0.0 31 0.0 0.0 0.0 0.0 0.0 32 0.0 0.0 0.0 0.0 0.0 33 0.0 0.0 0.0 0.0 0.0 34 0.0 0.0 0.0 0.0 0.0 35 0.0 0.0 0.0 0.0 0.0 36 0.0 0.0 0.0 0.0 0.0 37 0.0 0.0 0.0 0.0 0.0 38 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content pass >>END_MODULE Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409118 READS because READLEN < 1 Read 2409118 spots for SRR6322432.sra Written 2409118 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra Rejected 2409103 READS because READLEN < 1 Read 2409103 spots for SRR6322432.sra Written 2409103 spots for SRR6322432.sra SRR ids: ['SRR6322432.sra'] extra args: ['--split-files', '--defline-qual', '+'] tempdir: /tmp/pfd_eimnp037 SRR6322432.sra spots: 48182075 blocks: [[1, 2409103], [2409104, 4818206], [4818207, 7227309], [7227310, 9636412], [9636413, 12045515], [12045516, 14454618], [14454619, 16863721], [16863722, 19272824], [19272825, 21681927], [21681928, 24091030], [24091031, 26500133], [26500134, 28909236], [28909237, 31318339], [31318340, 33727442], [33727443, 36136545], [36136546, 38545648], [38545649, 40954751], [40954752, 43363854], [43363855, 45772957], [45772958, 48182075]] SRR6322432 file size 6753903 SRR6322432 completed basic pipeline successfully skewer v0.2.2 [April 4, 2016] COMMAND LINE: skewer -f sanger -l 18 -q 10 -k inf -t 20 -o SRR6322432 SRR6322432_1.fastq Input file: SRR6322432_1.fastq trimmed: SRR6322432-trimmed.fastq Parameters used: -- 3' end adapter sequence (-x): AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -- maximum error ratio allowed (-r): 0.100 -- maximum indel error ratio allowed (-d): 0.030 -- end quality threshold (-q): 10 -- minimum read length allowed after trimming (-l): 18 -- file format (-f): Sanger/Illumina 1.8+ FASTQ -- minimum overlap length for adapter detection (-k): inf -- number of concurrent threads (-t): 20 Sat Dec 7 12:24:02 2024 >> started Sat Dec 7 12:24:32 2024 >> done (29.702s) 48182075 reads processed; of these: 207 ( 0.00%) short reads filtered out after trimming by size control 332581 ( 0.69%) empty reads filtered out after trimming by size control 47849287 (99.31%) reads available; of these: 39 ( 0.00%) trimmed reads available after processing 47849248 (100.00%) untrimmed reads available after processing Length distribution of reads after trimming: length count percentage 18 39 0.00% 19 0 0.00% 20 0 0.00% 21 0 0.00% 22 0 0.00% 23 0 0.00% 24 0 0.00% 25 0 0.00% 26 0 0.00% 27 0 0.00% 28 0 0.00% 29 0 0.00% 30 0 0.00% 31 0 0.00% 32 0 0.00% 33 0 0.00% 34 0 0.00% 35 0 0.00% 36 0 0.00% 37 0 0.00% 38 0 0.00% 39 0 0.00% 40 0 0.00% 41 0 0.00% 42 0 0.00% 43 0 0.00% 44 0 0.00% 45 0 0.00% 46 0 0.00% 47 0 0.00% 48 0 0.00% 49 0 0.00% 50 47849248 100.00% 47849287 reads passed initial QC criterion=sequence-density sequence-density=1.08 sequence-density-rank=1 fanout-score=2.02 fanout-score-rank=28 prefix-density=1.11 prefix-fanout=2.0 sequence=TTTGGCTTTGGC criterion=fanout-score sequence-density=0.09 sequence-density-rank=31 fanout-score=81.78 fanout-score-rank=1 prefix-density=1.77 prefix-fanout=4.0 sequence=GCTGCTGCTGCATGATGGCCTGTGCCACGCCGTTGACAGCCTGGCACCGGAACTGCTCTGGGATCTGGGCCAGCTGCTGGCA Started job on | Dec 07 12:24:40 Started mapping on | Dec 07 12:24:40 Finished on | Dec 07 12:25:13 Mapping speed, Million of reads per hour | 5219.92 Number of input reads | 47849287 Average input read length | 49 UNIQUE READS: Uniquely mapped reads number | 37286435 Uniquely mapped reads % | 77.92% Average mapped length | 49.81 Number of splices: Total | 3702959 Number of splices: Annotated (sjdb) | 3478118 Number of splices: GT/AG | 3558443 Number of splices: GC/AG | 46245 Number of splices: AT/AC | 1668 Number of splices: Non-canonical | 96603 Mismatch rate per base, % | 0.35% Deletion rate per base | 0.00% Deletion average length | 1.60 Insertion rate per base | 0.00% Insertion average length | 1.46 MULTI-MAPPING READS: Number of reads mapped to multiple loci | 9449371 % of reads mapped to multiple loci | 19.75% Number of reads mapped to too many loci | 870565 % of reads mapped to too many loci | 1.82% UNMAPPED READS: % of reads unmapped: too many mismatches | 0.00% % of reads unmapped: too short | 0.48% % of reads unmapped: other | 0.03% CHIMERIC READS: Number of chimeric reads | 0 % of chimeric reads | 0.00% N_unmapped 1113481 1113481 1113481 N_multimapping 9449371 9449371 9449371 N_noFeature 1455063 36774605 1629953 N_ambiguous 438010 1229 101921 UnstrandedReadsAssigned:35393362 PositiveStrandReadsAssigned:510601 NegativeStrandReadsAssigned:35554561 Dataset is classified negative stranded MeadianReadLen=50 20thPercentileLength=50 echo kmer=45 SRR6322432 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31 [quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20 [index] k-mer length: 31 [index] number of targets: 52,972 [index] number of k-mers: 66,720,672 [index] number of equivalence classes: 111,837 [quant] running in single-end mode [quant] will process file 1: SRR6322432-trimmed.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 47,849,287 reads, 42,510,995 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,181 rounds 52973 SRR6322432.ke.tsv 35125 SRR6322432.se.tsv 88098 total ==> SRR6322432.ke.tsv <== target_id length eff_length est_counts tpm PNS24245 936 837 120.877 4.50664 PNS24247 1044 945 106.049 3.50195 PNS24249 1928 1829 387.222 6.60666 PNS24246 1044 945 106.049 3.50195 PNS24248 1044 945 106.049 3.50195 PNS24244 1471 1372 47.7551 1.08618 PNS24243 293 194 0 0 KQK14069 1603 1504 1913.72 39.7069 KQK14071 474 375 545.899 45.4273 ==> SRR6322432.se.tsv <== BRADI_1g14170v3 3004 BRADI_1g53295v3 790 BRADI_1g59795v3 410 BRADI_1g07683v3 0 BRADI_1g00485v3 9 BRADI_1g20270v3 351 BRADI_1g74790v3 0 BRADI_1g09890v3 3 BRADI_1g77505v3 327 BRADI_1g48960v3 0 SRR6322432 completed mapping pipeline successfully