Starting /dee2/code/volunteer_pipeline.sh SRR8742292
    current disk space = 1543056076800
    free memory = 1599811292 
SRR8742292 SRAfilesize
cbb84d17dc00ffe43acc3c251844c873  SRR8742292.sra
SRR8742292.sra file validated
SRR8742292 is single end
SRR8742292 is conventional basespace
SRR8742292 read1 length is 39-76 nt
##FastQC	0.11.5
>>Basic Statistics	pass
#Measure	Value
Filename	SRR8742292_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4000
Sequences flagged as poor quality	0
Sequence length	39-76
%GC	49
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	30.80325	32.0	32.0	32.0	32.0	32.0
2	30.96775	32.0	32.0	32.0	32.0	32.0
3	31.1715	32.0	32.0	32.0	32.0	32.0
4	31.28525	32.0	32.0	32.0	32.0	32.0
5	31.27275	32.0	32.0	32.0	32.0	32.0
6	34.065	36.0	36.0	36.0	32.0	36.0
7	34.6765	36.0	36.0	36.0	32.0	36.0
8	34.601	36.0	36.0	36.0	32.0	36.0
9	34.613	36.0	36.0	36.0	32.0	36.0
10-11	34.522875	36.0	36.0	36.0	32.0	36.0
12-13	34.554874999999996	36.0	36.0	36.0	32.0	36.0
14-15	34.4995	36.0	36.0	36.0	32.0	36.0
16-17	34.536375	36.0	36.0	36.0	32.0	36.0
18-19	34.429125	36.0	36.0	36.0	32.0	36.0
20-21	34.43075	36.0	36.0	36.0	32.0	36.0
22-23	34.492125	36.0	36.0	36.0	32.0	36.0
24-25	34.306625	36.0	36.0	36.0	32.0	36.0
26-27	34.325874999999996	36.0	36.0	36.0	32.0	36.0
28-29	34.0945	36.0	36.0	36.0	32.0	36.0
30-31	33.9315	36.0	36.0	36.0	32.0	36.0
32-33	34.085625	36.0	36.0	36.0	32.0	36.0
34-35	34.05425	36.0	36.0	36.0	32.0	36.0
36-37	34.027875	36.0	36.0	36.0	32.0	36.0
38-39	34.063375	36.0	36.0	36.0	32.0	36.0
40-41	33.94048512128032	36.0	36.0	36.0	32.0	36.0
42-43	34.057139284821204	36.0	36.0	36.0	32.0	36.0
44-45	33.844586146536635	36.0	36.0	36.0	32.0	36.0
46-47	33.97524381095273	36.0	36.0	36.0	32.0	36.0
48-49	33.94336084021005	36.0	36.0	36.0	32.0	36.0
50-51	33.68692173043261	36.0	36.0	36.0	29.5	36.0
52-53	33.687171792948234	36.0	36.0	36.0	27.0	36.0
54-55	33.290197549387344	36.0	36.0	36.0	24.0	36.0
56-57	33.31132783195799	36.0	36.0	36.0	27.0	36.0
58-59	33.30182545636409	36.0	36.0	36.0	24.0	36.0
60-61	33.39222305576394	36.0	36.0	36.0	24.0	36.0
62-63	33.12053013253313	36.0	36.0	36.0	21.0	36.0
64-65	33.18217054263566	36.0	36.0	36.0	21.0	36.0
66-67	32.94447242375877	36.0	32.0	36.0	24.0	36.0
68-69	33.039577948003085	36.0	32.0	36.0	24.0	36.0
70-71	32.94227397946406	36.0	32.0	36.0	21.0	36.0
72-73	32.889474124237104	36.0	32.0	36.0	21.0	36.0
74-75	32.71644835865241	36.0	32.0	36.0	17.5	36.0
76	31.57942170484416	36.0	32.0	36.0	14.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
19	1.0
20	0.0
21	1.0
22	4.0
23	9.0
24	11.0
25	28.0
26	45.0
27	57.0
28	101.0
29	154.0
30	172.0
31	229.0
32	286.0
33	433.0
34	821.0
35	1648.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	35.275	11.275	5.8999999999999995	47.55
2	18.85	13.975000000000001	43.15	24.025
3	19.2	17.474999999999998	23.549999999999997	39.775
4	25.324999999999996	27.375	20.525	26.775
5	23.5	34.25	22.975	19.275000000000002
6	21.03134479271992	32.077856420626894	25.40444893832154	21.48634984833165
7	17.424999999999997	24.05	40.2	18.325
8	19.425	22.375	31.924999999999997	26.275
9	19.525000000000002	20.849999999999998	35.125	24.5
10-11	23.549999999999997	30.7375	23.325000000000003	22.3875
12-13	22.7	24.5625	27.2625	25.474999999999998
14-15	21.9375	25.900000000000002	27.150000000000002	25.0125
16-17	23.175	25.374999999999996	25.674999999999997	25.775
18-19	22.6875	25.025	26.325	25.9625
20-21	22.925	24.9875	26.900000000000002	25.1875
22-23	22.925	26.0375	26.087500000000002	24.95
24-25	22.6875	25.15	25.637500000000003	26.525
26-27	23.375	25.724999999999998	25.5375	25.362499999999997
28-29	22.325	25.4	26.737499999999997	25.5375
30-31	22.912499999999998	25.5625	24.9125	26.6125
32-33	23.5625	25.25	25.4375	25.75
34-35	23.0125	26.1	25.337500000000002	25.55
36-37	23.025000000000002	25.374999999999996	25.387500000000003	26.2125
38-39	23.2125	24.712500000000002	25.687500000000004	26.387500000000003
40-41	23.193298324581146	26.144036009002253	25.693923480870218	24.968742185546386
42-43	23.668417104276067	25.218804701175294	25.806451612903224	25.30632658164541
44-45	22.918229557389346	25.11877969492373	26.094023505876468	25.868967241810452
46-47	23.055763940985248	25.831457864466117	25.868967241810452	25.243810952738183
48-49	23.643410852713178	24.55613903475869	25.6064016004001	26.19404851212803
50-51	23.705926481620406	26.131532883220803	25.23130782695674	24.93123280820205
52-53	22.893223305826456	25.79394848712178	25.98149537384346	25.331332833208304
54-55	23.36834208552138	25.49387346836709	25.456364091022753	25.681420355088775
56-57	22.61815453863466	25.331332833208304	25.918979744936234	26.131532883220803
58-59	22.73068267066767	26.16904226056514	25.218804701175294	25.881470367591895
60-61	24.168542135533883	25.35633908477119	24.843710927731934	25.63140785196299
62-63	23.605901475368842	25.531382845711427	25.618904726181547	25.243810952738183
64-65	22.95573893473368	26.131532883220803	24.256064016004	26.65666416604151
66-67	23.23371264224084	25.4345379517319	25.797173940227587	25.534575465799676
68-69	22.715894868585732	25.018773466833544	27.033792240300375	25.231539424280353
70-71	23.31580265464563	25.331830703731526	25.6824442774856	25.66992236413724
72-73	23.66767219708396	25.72900955253896	24.87430869783811	25.72900955253896
74-75	24.21136696392919	21.589245308132572	27.219486223878608	26.97990150405963
76	25.497559143822755	0.0	33.871573413443485	40.63086744273376
>>END_MODULE
>>Per sequence GC content	warn
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.0
21	0.0
22	0.0
23	1.5
24	2.5
25	1.0
26	0.5
27	3.0
28	10.0
29	15.5
30	17.5
31	18.5
32	24.5
33	35.5
34	48.0
35	65.5
36	83.5
37	93.5
38	109.0
39	134.5
40	170.0
41	202.5
42	202.0
43	232.0
44	262.5
45	272.5
46	276.5
47	257.0
48	245.0
49	222.0
50	208.0
51	197.5
52	180.5
53	173.5
54	170.5
55	156.0
56	141.0
57	128.5
58	120.0
59	118.5
60	105.5
61	90.0
62	79.0
63	70.0
64	68.0
65	64.0
66	49.5
67	41.5
68	36.0
69	24.5
70	18.5
71	16.5
72	12.5
73	12.0
74	10.0
75	6.5
76	3.5
77	1.0
78	1.5
79	2.0
80	1.5
81	0.5
82	0.5
83	1.0
84	0.5
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.5
94	0.5
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	1.0999999999999999
7	0.0
8	0.0
9	0.0
10-11	0.0
12-13	0.0
14-15	0.0
16-17	0.0
18-19	0.0
20-21	0.0
22-23	0.0
24-25	0.0
26-27	0.0
28-29	0.0
30-31	0.0
32-33	0.0
34-35	0.0
36-37	0.0
38-39	0.0
40-41	0.0
42-43	0.0
44-45	0.0
46-47	0.0
48-49	0.0
50-51	0.0
52-53	0.0
54-55	0.0
56-57	0.0
58-59	0.0
60-61	0.0
62-63	0.0
64-65	0.0
66-67	0.0
68-69	0.0
70-71	0.0
72-73	0.0
74-75	0.0
76	0.0
>>END_MODULE
>>Sequence Length Distribution	warn
#Length	Count
39	1.0
40	0.0
41	0.0
42	0.0
43	0.0
44	0.0
45	0.0
46	0.0
47	0.0
48	0.0
49	0.0
50	0.0
51	0.0
52	0.0
53	0.0
54	0.0
55	0.0
56	0.0
57	0.0
58	0.0
59	0.0
60	0.0
61	0.0
62	0.0
63	0.0
64	0.0
65	0.0
66	1.0
67	2.0
68	2.0
69	1.0
70	0.0
71	6.0
72	18.0
73	77.0
74	271.0
75	958.0
76	2663.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Deduplicated Percentage	99.275
#Duplication Level	Percentage of deduplicated	Percentage of total
1	99.26970536388819	98.55000000000001
2	0.7302946361118107	1.4500000000000002
3	0.0	0.0
4	0.0	0.0
5	0.0	0.0
6	0.0	0.0
7	0.0	0.0
8	0.0	0.0
9	0.0	0.0
>10	0.0	0.0
>50	0.0	0.0
>100	0.0	0.0
>500	0.0	0.0
>1k	0.0	0.0
>5k	0.0	0.0
>10k+	0.0	0.0
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
1	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0
8	0.0	0.0	0.0	0.0	0.0
9	0.0	0.0	0.0	0.0	0.0
10	0.0	0.0	0.0	0.0	0.0
11	0.0	0.0	0.0	0.0	0.0
12	0.0	0.0	0.0	0.0	0.0
13	0.0	0.0	0.0	0.0	0.0
14	0.0	0.0	0.0	0.0	0.0
15	0.0	0.0	0.0	0.0	0.0
16	0.0	0.0	0.0	0.0	0.0
17	0.0	0.0	0.0	0.0	0.0
18	0.0	0.0	0.0	0.0	0.0
19	0.0	0.0	0.0	0.0	0.0
20	0.0	0.0	0.0	0.0	0.0
21	0.0	0.0	0.0	0.0	0.0
22	0.0	0.0	0.0	0.0	0.0
23	0.0	0.0	0.0	0.0	0.0
24	0.0	0.0	0.0	0.0	0.0
25	0.0	0.0	0.0	0.0	0.0
26	0.0	0.0	0.0	0.0	0.0
27	0.0	0.0	0.0	0.0	0.0
28	0.0	0.0	0.0	0.0	0.0
29	0.0	0.0	0.0	0.0	0.0
30	0.0	0.0	0.0	0.0	0.0
31	0.0	0.0	0.0	0.0	0.0
32	0.0	0.0	0.0	0.0	0.0
33	0.0	0.0	0.0	0.0	0.0
34	0.0	0.0	0.0	0.0	0.0
35	0.0	0.0	0.0	0.0	0.0
36	0.0	0.0	0.0	0.0	0.0
37	0.0	0.0	0.0	0.0	0.0
38	0.0	0.0	0.0	0.0	0.0
39	0.0	0.0	0.0	0.0	0.0
40	0.0	0.0	0.0	0.0	0.0
41	0.0	0.0	0.0	0.0	0.0
42	0.0	0.0	0.0	0.0	0.0
43	0.0	0.0	0.0	0.0	0.0
44	0.0	0.0	0.0	0.0	0.0
45	0.0	0.0	0.0	0.0	0.0
46	0.0	0.0	0.0	0.0	0.0
47	0.0	0.0	0.0	0.0	0.0
48	0.0	0.0	0.0	0.0	0.0
49	0.0	0.0	0.0	0.0	0.0
50	0.0	0.0	0.0	0.0	0.0
51	0.0	0.0	0.0	0.0	0.0
52	0.0	0.0	0.0	0.0	0.0
53	0.0	0.0	0.0	0.0	0.0
54	0.0	0.0	0.0	0.0	0.0
55	0.0	0.0	0.0	0.0	0.0
56	0.0	0.0	0.0	0.0	0.0
57	0.0	0.0	0.0	0.0	0.0
58	0.0	0.0	0.0	0.0	0.0
59	0.0	0.0	0.0	0.0	0.0
60	0.0	0.0	0.0	0.0	0.0
61	0.0	0.0	0.0	0.0	0.0
62	0.0	0.0	0.0	0.0	0.0
63	0.0	0.0	0.0	0.0	0.0
64	0.0	0.0	0.0	0.0	0.0
>>END_MODULE
>>Kmer Content	pass
>>END_MODULE
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
Rejected 1200906 READS because READLEN < 1
Read 1200906 spots for SRR8742292.sra
Written 1200906 spots for SRR8742292.sra
SRR ids: ['SRR8742292.sra']
extra args: ['--split-files', '--defline-qual', '+']
tempdir: /tmp/pfd_91k349k7
SRR8742292.sra spots: 24018120
blocks: [[1, 1200906], [1200907, 2401812], [2401813, 3602718], [3602719, 4803624], [4803625, 6004530], [6004531, 7205436], [7205437, 8406342], [8406343, 9607248], [9607249, 10808154], [10808155, 12009060], [12009061, 13209966], [13209967, 14410872], [14410873, 15611778], [15611779, 16812684], [16812685, 18013590], [18013591, 19214496], [19214497, 20415402], [20415403, 21616308], [21616309, 22817214], [22817215, 24018120]]
SRR8742292 file size 4551719
SRR8742292 completed basic pipeline successfully
skewer v0.2.2 [April 4, 2016]
COMMAND LINE:	skewer -f sanger -l 18 -q 10 -k inf -t 20 -o SRR8742292 SRR8742292_1.fastq
Input file:	SRR8742292_1.fastq
trimmed:	SRR8742292-trimmed.fastq

Parameters used:
-- 3' end adapter sequence (-x):	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
-- maximum error ratio allowed (-r):	0.100
-- maximum indel error ratio allowed (-d):	0.030
-- end quality threshold (-q):		10
-- minimum read length allowed after trimming (-l):	18
-- file format (-f):		Sanger/Illumina 1.8+ FASTQ 
-- minimum overlap length for adapter detection (-k):	inf
-- number of concurrent threads (-t):	20
Sat Dec  7 11:26:11 2024 >> started

Sat Dec  7 11:26:22 2024 >> done (11.123s)
24018120 reads processed; of these:
       1 ( 0.00%) short reads filtered out after trimming by size control
    3058 ( 0.01%) empty reads filtered out after trimming by size control
24015061 (99.99%) reads available; of these:
    1727 ( 0.01%) trimmed reads available after processing
24013334 (99.99%) untrimmed reads available after processing

Length distribution of reads after trimming:
length	count	percentage
 18	       1	  0.00%
 19	       0	  0.00%
 20	       0	  0.00%
 21	       1	  0.00%
 22	      15	  0.00%
 23	      21	  0.00%
 24	      30	  0.00%
 25	      41	  0.00%
 26	      50	  0.00%
 27	      60	  0.00%
 28	      69	  0.00%
 29	      90	  0.00%
 30	     105	  0.00%
 31	     119	  0.00%
 32	     145	  0.00%
 33	     157	  0.00%
 34	     662	  0.00%
 35	     301	  0.00%
 36	     301	  0.00%
 37	     345	  0.00%
 38	     349	  0.00%
 39	     355	  0.00%
 40	     457	  0.00%
 41	     518	  0.00%
 42	     580	  0.00%
 43	     574	  0.00%
 44	     624	  0.00%
 45	     697	  0.00%
 46	     814	  0.00%
 47	     849	  0.00%
 48	     964	  0.00%
 49	    1064	  0.00%
 50	    1121	  0.00%
 51	    1338	  0.01%
 52	    1435	  0.01%
 53	    1674	  0.01%
 54	    1753	  0.01%
 55	    1900	  0.01%
 56	    2049	  0.01%
 57	    2147	  0.01%
 58	    2531	  0.01%
 59	    2736	  0.01%
 60	    3111	  0.01%
 61	    3391	  0.01%
 62	    3782	  0.02%
 63	    4267	  0.02%
 64	    4755	  0.02%
 65	    5579	  0.02%
 66	    6448	  0.03%
 67	    6320	  0.03%
 68	    6222	  0.03%
 69	    7668	  0.03%
 70	   11247	  0.05%
 71	   40639	  0.17%
 72	  114775	  0.48%
 73	  430296	  1.79%
 74	 1548423	  6.45%
 75	 5665080	 23.59%
 76	16124016	 67.14%
24015061 reads passed initial QC


criterion=sequence-density
sequence-density=0.31
sequence-density-rank=1
fanout-score=2.70
fanout-score-rank=16
prefix-density=0.34
prefix-fanout=2.4
sequence=GGTGTTGTCGAAGCCGATGATGCGGACATAGGCGTC


criterion=fanout-score
sequence-density=0.02
sequence-density-rank=25
fanout-score=72.00
fanout-score-rank=1
prefix-density=0.12
prefix-fanout=11.3
sequence=CAATCTTCTTGCCATCAACAGTCGATTGGTAGAGGGTCTCCTCGAAGAGGATAGCACCAGAGATGTAATTTCCCAGGCCTGGTGGAGTGACAAGGAGGGTACGGTAAGCCTGGCGGTTAGCCTCAGTGTTCTCAAGGCCAATCGAGTCAAGTCTCTTTCCACAGGTAGCATTGGACTCATCCATGGCTAGGATGCCCCTTCCTGGTGATGCGATGGTATTCGCGGTCTTGACAAGTTCATCAGCGTATGCGCTGGCACGGACAACCATGGAGACGGTCATCTGCTTGGGAGTGGCAGCCTGGCGGGTGGCGCCCCATTCGGACTTCTTGGGAAGGAAAGACGATTTGAGGATAGTAGCCGAGGCCATTGTTTCTGGCTCCAAAGGCAAGAGGAT
                                 Started job on |	Dec 07 11:26:47
                             Started mapping on |	Dec 07 11:26:47
                                    Finished on |	Dec 07 11:27:07
       Mapping speed, Million of reads per hour |	4322.71

                          Number of input reads |	24015061
                      Average input read length |	75
                                    UNIQUE READS:
                   Uniquely mapped reads number |	23225393
                        Uniquely mapped reads % |	96.71%
                          Average mapped length |	75.29
                       Number of splices: Total |	5948638
            Number of splices: Annotated (sjdb) |	5726262
                       Number of splices: GT/AG |	5868598
                       Number of splices: GC/AG |	72617
                       Number of splices: AT/AC |	3429
               Number of splices: Non-canonical |	3994
                      Mismatch rate per base, % |	0.37%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.33
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.23
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	451171
             % of reads mapped to multiple loci |	1.88%
        Number of reads mapped to too many loci |	183496
             % of reads mapped to too many loci |	0.76%
                                  UNMAPPED READS:
       % of reads unmapped: too many mismatches |	0.00%
                 % of reads unmapped: too short |	0.58%
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%
N_unmapped	338497	338497	338497
N_multimapping	451171	451171	451171
N_noFeature	787041	22725108	900260
N_ambiguous	420584	1625	34481
UnstrandedReadsAssigned:22017768 PositiveStrandReadsAssigned:498660 NegativeStrandReadsAssigned:22290652
Dataset is classified negative stranded
MeadianReadLen=76 20thPercentileLength=75 echo kmer=71
SRR8742292 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31

[quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20
[index] k-mer length: 31
[index] number of targets: 52,972
[index] number of k-mers: 66,720,672
[index] number of equivalence classes: 111,837
[quant] running in single-end mode
[quant] will process file 1: SRR8742292-trimmed.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 24,015,061 reads, 22,334,918 reads pseudoaligned
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,188 rounds

  52973 SRR8742292.ke.tsv
  35125 SRR8742292.se.tsv
  88098 total
==> SRR8742292.ke.tsv <==
target_id	length	eff_length	est_counts	tpm
PNS24245	936	837	132.355	11.5113
PNS24247	1044	945	35.0061	2.69662
PNS24249	1928	1829	19.1734	0.76312
PNS24246	1044	945	35.0061	2.69662
PNS24248	1044	945	35.0061	2.69662
PNS24244	1471	1372	137.453	7.29304
PNS24243	293	194	0	0
KQK14069	1603	1504	3779.51	182.934
KQK14071	474	375	476.612	92.5212

==> SRR8742292.se.tsv <==
BRADI_1g14170v3	4590
BRADI_1g53295v3	77
BRADI_1g59795v3	353
BRADI_1g07683v3	0
BRADI_1g00485v3	68
BRADI_1g20270v3	3225
BRADI_1g74790v3	165
BRADI_1g09890v3	2
BRADI_1g77505v3	415
BRADI_1g48960v3	0
SRR8742292 completed mapping pipeline successfully
