Starting /dee2/code/volunteer_pipeline.sh ERR4131604
    current disk space = 3051682820096
    free memory = 1418511448 
ERR4131604 SRAfilesize
cd186bf70e45274391cf55bf94a8659a  ERR4131604.sra
ERR4131604.sra file validated
ERR4131604 is single end
ERR4131604 is conventional basespace
ERR4131604 read1 length is 53-76 nt
##FastQC	0.11.5
>>Basic Statistics	pass
#Measure	Value
Filename	ERR4131604_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4000
Sequences flagged as poor quality	0
Sequence length	53-76
%GC	46
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.68375	32.0	32.0	32.0	32.0	32.0
2	31.69325	32.0	32.0	32.0	32.0	32.0
3	31.731	32.0	32.0	32.0	32.0	32.0
4	31.75375	32.0	32.0	32.0	32.0	32.0
5	31.79475	32.0	32.0	32.0	32.0	32.0
6	35.243	36.0	36.0	36.0	36.0	36.0
7	35.55975	36.0	36.0	36.0	36.0	36.0
8	35.4035	36.0	36.0	36.0	36.0	36.0
9	35.4745	36.0	36.0	36.0	36.0	36.0
10-11	35.457750000000004	36.0	36.0	36.0	36.0	36.0
12-13	35.51625	36.0	36.0	36.0	36.0	36.0
14-15	35.461375000000004	36.0	36.0	36.0	36.0	36.0
16-17	35.466	36.0	36.0	36.0	36.0	36.0
18-19	35.39775	36.0	36.0	36.0	36.0	36.0
20-21	35.397375	36.0	36.0	36.0	36.0	36.0
22-23	35.29325	36.0	36.0	36.0	36.0	36.0
24-25	35.286875	36.0	36.0	36.0	36.0	36.0
26-27	35.35975	36.0	36.0	36.0	36.0	36.0
28-29	35.238875	36.0	36.0	36.0	36.0	36.0
30-31	35.226749999999996	36.0	36.0	36.0	36.0	36.0
32-33	35.171625000000006	36.0	36.0	36.0	36.0	36.0
34-35	35.168000000000006	36.0	36.0	36.0	36.0	36.0
36-37	35.17775	36.0	36.0	36.0	36.0	36.0
38-39	35.145125	36.0	36.0	36.0	36.0	36.0
40-41	35.10525	36.0	36.0	36.0	36.0	36.0
42-43	35.082375	36.0	36.0	36.0	36.0	36.0
44-45	35.110125	36.0	36.0	36.0	36.0	36.0
46-47	35.092375000000004	36.0	36.0	36.0	36.0	36.0
48-49	35.074375	36.0	36.0	36.0	36.0	36.0
50-51	35.0075	36.0	36.0	36.0	36.0	36.0
52-53	34.840125	36.0	36.0	36.0	36.0	36.0
54-55	34.790947736934235	36.0	36.0	36.0	36.0	36.0
56-57	34.898224556139034	36.0	36.0	36.0	36.0	36.0
58-59	34.73143285821455	36.0	36.0	36.0	34.0	36.0
60-61	34.68551420621539	36.0	36.0	36.0	32.0	36.0
62-63	34.73105377763957	36.0	36.0	36.0	32.0	36.0
64-65	34.72922922922923	36.0	36.0	36.0	32.0	36.0
66-67	34.67637117164095	36.0	36.0	36.0	32.0	36.0
68-69	34.71786519669256	36.0	36.0	36.0	32.0	36.0
70-71	34.608243547982966	36.0	36.0	36.0	32.0	36.0
72-73	34.47920209417207	36.0	36.0	36.0	32.0	36.0
74-75	34.376556715582375	36.0	36.0	36.0	32.0	36.0
76	33.593098217671596	36.0	32.0	36.0	27.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
21	1.0
22	0.0
23	2.0
24	4.0
25	12.0
26	21.0
27	31.0
28	33.0
29	38.0
30	67.0
31	77.0
32	116.0
33	154.0
34	448.0
35	2996.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	39.7	13.450000000000001	15.6	31.25
2	24.975	21.349999999999998	28.975	24.7
3	24.725	27.6	23.175	24.5
4	27.6	33.75	17.8	20.849999999999998
5	25.825	36.875	20.225	17.075000000000003
6	18.525044047319405	37.477976340297005	24.515479486534105	19.481500125849486
7	18.025	18.875	40.9	22.2
8	20.1	22.55	29.175	28.175
9	21.05	21.224999999999998	31.05	26.674999999999997
10-11	23.4625	31.662499999999998	22.725	22.15
12-13	21.95	25.8125	28.599999999999998	23.6375
14-15	22.5625	26.3	27.450000000000003	23.6875
16-17	22.650000000000002	27.325	26.724999999999998	23.3
18-19	22.625	26.974999999999998	26.55	23.849999999999998
20-21	23.0875	26.825	26.575	23.5125
22-23	22.6125	27.950000000000003	26.137500000000003	23.3
24-25	23.1	27.775	26.150000000000002	22.975
26-27	22.675	27.6375	26.637499999999996	23.05
28-29	23.0875	27.250000000000004	25.912499999999998	23.75
30-31	22.643160790197552	26.994248562140534	26.281570392598148	24.081020255063766
32-33	22.63631815907954	26.538269134567283	27.501250625312657	23.32416208104052
34-35	23.393348337084273	26.84421105276319	26.069017254313575	23.69342335583896
36-37	22.615326915864483	27.953494186773348	26.790848856107015	22.640330041255158
38-39	23.07788473559195	27.028378547318415	26.665833229153645	23.22790348793599
40-41	22.6125	27.212500000000002	27.287499999999998	22.8875
42-43	23.0125	27.474999999999998	26.8	22.7125
44-45	23.125	27.55	26.8375	22.4875
46-47	23.6375	26.987499999999997	26.087500000000002	23.2875
48-49	23.3625	26.25	27.3	23.0875
50-51	22.162499999999998	27.525	27.9125	22.400000000000002
52-53	23.827978497312163	27.21590198774847	26.24078009751219	22.715339417427177
54-55	23.54927463731866	27.75137568784392	26.3631815907954	22.336168084042022
56-57	22.24584219082156	27.64786795048143	27.597849193447544	22.50844066524947
58-59	23.793448362090523	26.63165791447862	26.36909227306827	23.20580145036259
60-61	24.73427535325747	26.35988495685882	26.13480055020633	22.77103913967738
62-63	22.804603452589443	27.733299974981236	26.35726795096322	23.1048286214661
64-65	23.24824824824825	27.815315315315313	26.076076076076077	22.86036036036036
66-67	23.98246712586099	26.80025046963056	26.136505948653728	23.080776455854725
68-69	22.475570032573287	27.900275620145326	26.396893009270862	23.227261338010525
70-71	23.11450764219494	27.286394387371587	25.770483588073162	23.82861438236031
72-73	23.50797838924488	27.516019600452317	26.18419399422038	22.791808016082424
74-75	22.926113630301415	23.72632702053881	28.15417444651907	25.1933849026407
76	24.080394387561626	0.0	41.714069017823284	34.2055365946151
>>END_MODULE
>>Per sequence GC content	warn
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.5
10	0.5
11	0.0
12	0.0
13	0.0
14	0.0
15	0.5
16	1.5
17	1.5
18	0.5
19	0.5
20	1.0
21	1.0
22	2.0
23	3.5
24	6.5
25	9.5
26	12.5
27	14.5
28	15.5
29	18.0
30	21.0
31	32.0
32	47.0
33	54.0
34	67.0
35	90.5
36	108.0
37	111.0
38	126.5
39	162.0
40	187.5
41	231.5
42	273.0
43	278.0
44	284.5
45	302.5
46	318.0
47	310.0
48	274.0
49	239.0
50	224.5
51	200.5
52	164.0
53	145.0
54	139.0
55	130.0
56	118.5
57	106.5
58	94.5
59	78.5
60	57.0
61	43.5
62	36.5
63	27.0
64	18.5
65	13.0
66	11.0
67	12.0
68	10.5
69	10.5
70	10.5
71	9.0
72	7.5
73	7.5
74	9.5
75	10.5
76	9.0
77	6.0
78	2.5
79	0.0
80	0.0
81	0.0
82	0.0
83	0.0
84	0.0
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.675
7	0.0
8	0.0
9	0.0
10-11	0.0
12-13	0.0
14-15	0.0
16-17	0.0
18-19	0.0
20-21	0.0
22-23	0.0
24-25	0.0
26-27	0.0
28-29	0.0
30-31	0.025
32-33	0.05
34-35	0.025
36-37	0.0125
38-39	0.0125
40-41	0.0
42-43	0.0
44-45	0.0
46-47	0.0
48-49	0.0
50-51	0.0
52-53	0.0125
54-55	0.025006251562890724
56-57	0.012503125781445362
58-59	0.0
60-61	0.0
62-63	0.0
64-65	0.0
66-67	0.0
68-69	0.0
70-71	0.0
72-73	0.0
74-75	0.0
76	0.0
>>END_MODULE
>>Sequence Length Distribution	warn
#Length	Count
53	1.0
54	0.0
55	0.0
56	0.0
57	0.0
58	0.0
59	0.0
60	1.0
61	0.0
62	2.0
63	0.0
64	0.0
65	2.0
66	3.0
67	0.0
68	0.0
69	0.0
70	0.0
71	2.0
72	19.0
73	74.0
74	294.0
75	965.0
76	2637.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Deduplicated Percentage	98.35000000000001
#Duplication Level	Percentage of deduplicated	Percentage of total
1	98.60193187595323	96.975
2	1.1184544992374175	2.1999999999999997
3	0.27961362480935437	0.8250000000000001
4	0.0	0.0
5	0.0	0.0
6	0.0	0.0
7	0.0	0.0
8	0.0	0.0
9	0.0	0.0
>10	0.0	0.0
>50	0.0	0.0
>100	0.0	0.0
>500	0.0	0.0
>1k	0.0	0.0
>5k	0.0	0.0
>10k+	0.0	0.0
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
1	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0
8	0.0	0.0	0.0	0.0	0.0
9	0.0	0.0	0.0	0.0	0.0
10	0.0	0.0	0.0	0.0	0.0
11	0.0	0.0	0.0	0.0	0.0
12	0.0	0.0	0.0	0.0	0.0
13	0.0	0.0	0.0	0.0	0.0
14	0.0	0.0	0.0	0.0	0.0
15	0.0	0.0	0.0	0.0	0.0
16	0.0	0.0	0.0	0.0	0.0
17	0.0	0.0	0.0	0.0	0.0
18	0.0	0.0	0.0	0.0	0.0
19	0.0	0.0	0.0	0.0	0.0
20	0.0	0.0	0.0	0.0	0.0
21	0.0	0.0	0.0	0.0	0.0
22	0.0	0.0	0.0	0.0	0.0
23	0.0	0.0	0.0	0.0	0.0
24	0.0	0.0	0.0	0.0	0.0
25	0.0	0.0	0.0	0.0	0.0
26	0.0	0.0	0.0	0.0	0.0
27	0.0	0.0	0.0	0.0	0.0
28	0.0	0.0	0.0	0.0	0.0
29	0.0	0.0	0.0	0.0	0.0
30	0.0	0.0	0.0	0.0	0.0
31	0.0	0.0	0.0	0.0	0.0
32	0.0	0.0	0.0	0.0	0.0
33	0.0	0.0	0.0	0.0	0.0
34	0.0	0.0	0.0	0.0	0.0
35	0.0	0.0	0.0	0.0	0.0
36	0.0	0.0	0.0	0.0	0.0
37	0.025	0.0	0.0	0.0	0.0
38	0.025	0.0	0.0	0.0	0.0
39	0.025	0.0	0.0	0.0	0.0
40	0.025	0.0	0.0	0.0	0.0
41	0.025	0.0	0.0	0.0	0.0
42	0.025	0.0	0.0	0.0	0.0
43	0.025	0.0	0.0	0.0	0.0
44	0.025	0.0	0.0	0.0	0.0
45	0.025	0.0	0.0	0.0	0.0
46	0.025	0.0	0.0	0.0	0.0
47	0.025	0.0	0.0	0.0	0.0
48	0.025	0.0	0.0	0.0	0.0
49	0.025	0.0	0.0	0.0	0.0
50	0.025	0.0	0.0	0.0	0.0
51	0.025	0.0	0.0	0.0	0.0
52	0.025	0.0	0.0	0.0	0.0
53	0.025	0.0	0.0	0.0	0.0
54	0.025	0.0	0.0	0.0	0.0
55	0.025	0.0	0.0	0.0	0.0
56	0.025	0.0	0.0	0.0	0.0
57	0.025	0.0	0.0	0.0	0.0
58	0.025	0.0	0.0	0.0	0.0
59	0.025	0.0	0.0	0.0	0.0
60	0.025	0.0	0.0	0.0	0.0
61	0.025	0.0	0.0	0.0	0.0
62	0.025	0.0	0.0	0.0	0.0
63	0.025	0.0	0.0	0.0	0.0
64	0.025	0.0	0.0	0.0	0.0
>>END_MODULE
>>Kmer Content	pass
>>END_MODULE
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255785 READS because READLEN < 1
Read 1255785 spots for ERR4131604.sra
Written 1255785 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
Rejected 1255778 READS because READLEN < 1
Read 1255778 spots for ERR4131604.sra
Written 1255778 spots for ERR4131604.sra
SRR ids: ['ERR4131604.sra']
extra args: ['--split-files', '--defline-qual', '+']
tempdir: /tmp/pfd_buvcrmtl
ERR4131604.sra spots: 25115567
blocks: [[1, 1255778], [1255779, 2511556], [2511557, 3767334], [3767335, 5023112], [5023113, 6278890], [6278891, 7534668], [7534669, 8790446], [8790447, 10046224], [10046225, 11302002], [11302003, 12557780], [12557781, 13813558], [13813559, 15069336], [15069337, 16325114], [16325115, 17580892], [17580893, 18836670], [18836671, 20092448], [20092449, 21348226], [21348227, 22604004], [22604005, 23859782], [23859783, 25115567]]
ERR4131604 file size 4758985
ERR4131604 completed basic pipeline successfully
skewer v0.2.2 [April 4, 2016]
COMMAND LINE:	skewer -f sanger -l 18 -q 10 -k inf -t 20 -o ERR4131604 ERR4131604_1.fastq
Input file:	ERR4131604_1.fastq
trimmed:	ERR4131604-trimmed.fastq

Parameters used:
-- 3' end adapter sequence (-x):	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
-- maximum error ratio allowed (-r):	0.100
-- maximum indel error ratio allowed (-d):	0.030
-- end quality threshold (-q):		10
-- minimum read length allowed after trimming (-l):	18
-- file format (-f):		Sanger/Illumina 1.8+ FASTQ 
-- minimum overlap length for adapter detection (-k):	inf
-- number of concurrent threads (-t):	20
Wed Feb 12 14:34:21 2025 >> started

Wed Feb 12 14:34:41 2025 >> done (20.153s)
25115567 reads processed; of these:
     180 ( 0.00%) short reads filtered out after trimming by size control
  134855 ( 0.54%) empty reads filtered out after trimming by size control
24980532 (99.46%) reads available; of these:
    2734 ( 0.01%) trimmed reads available after processing
24977798 (99.99%) untrimmed reads available after processing

Length distribution of reads after trimming:
length	count	percentage
 18	       3	  0.00%
 19	       2	  0.00%
 20	       3	  0.00%
 21	       9	  0.00%
 22	       9	  0.00%
 23	      15	  0.00%
 24	      21	  0.00%
 25	      31	  0.00%
 26	      33	  0.00%
 27	      43	  0.00%
 28	      47	  0.00%
 29	      47	  0.00%
 30	      55	  0.00%
 31	      66	  0.00%
 32	      74	  0.00%
 33	      72	  0.00%
 34	      52	  0.00%
 35	     699	  0.00%
 36	     689	  0.00%
 37	     780	  0.00%
 38	     759	  0.00%
 39	     897	  0.00%
 40	     927	  0.00%
 41	     945	  0.00%
 42	     994	  0.00%
 43	     991	  0.00%
 44	    1001	  0.00%
 45	    1027	  0.00%
 46	    1156	  0.00%
 47	    1160	  0.00%
 48	    1248	  0.00%
 49	    1291	  0.01%
 50	    1376	  0.01%
 51	    1506	  0.01%
 52	    1570	  0.01%
 53	    1883	  0.01%
 54	    2012	  0.01%
 55	    2149	  0.01%
 56	    2343	  0.01%
 57	    2363	  0.01%
 58	    2607	  0.01%
 59	    2725	  0.01%
 60	    3062	  0.01%
 61	    3242	  0.01%
 62	    3582	  0.01%
 63	    4033	  0.02%
 64	    4426	  0.02%
 65	    4934	  0.02%
 66	    6412	  0.03%
 67	    5924	  0.02%
 68	    7110	  0.03%
 69	    7673	  0.03%
 70	   11134	  0.04%
 71	   34640	  0.14%
 72	  135223	  0.54%
 73	  498515	  2.00%
 74	 1708471	  6.84%
 75	 6131103	 24.54%
 76	16375368	 65.55%
24980532 reads passed initial QC


criterion=sequence-density
sequence-density=0.21
sequence-density-rank=1
fanout-score=1.92
fanout-score-rank=33
prefix-density=0.20
prefix-fanout=1.9
sequence=CCGGCGATGCGC


criterion=fanout-score
sequence-density=0.02
sequence-density-rank=35
fanout-score=23.56
fanout-score-rank=1
prefix-density=0.20
prefix-fanout=1.9
sequence=CGCATCGCCGGCCCCCATCCACTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGCAGACAGCGCCTCGTGGTGCGGCAGGGTCCAGCCACGACGGGGCTCTCACCCTCTCCGGCGCCCCTTTCCAGGGGACTTGGGCCTGGTCCGCCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGCCGCAGGCGCCAGATTCTCAAGCTGGGCATTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGTAAGTTTCTTTTCCT
                                 Started job on |	Feb 12 14:35:04
                             Started mapping on |	Feb 12 14:35:05
                                    Finished on |	Feb 12 14:35:42
       Mapping speed, Million of reads per hour |	2430.54

                          Number of input reads |	24980532
                      Average input read length |	75
                                    UNIQUE READS:
                   Uniquely mapped reads number |	20033711
                        Uniquely mapped reads % |	80.20%
                          Average mapped length |	75.12
                       Number of splices: Total |	4321975
            Number of splices: Annotated (sjdb) |	4261604
                       Number of splices: GT/AG |	4229204
                       Number of splices: GC/AG |	72673
                       Number of splices: AT/AC |	7122
               Number of splices: Non-canonical |	12976
                      Mismatch rate per base, % |	0.49%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.90
                        Insertion rate per base |	0.01%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1495588
             % of reads mapped to multiple loci |	5.99%
        Number of reads mapped to too many loci |	3081575
             % of reads mapped to too many loci |	12.34%
                                  UNMAPPED READS:
       % of reads unmapped: too many mismatches |	0.00%
                 % of reads unmapped: too short |	1.47%
                     % of reads unmapped: other |	0.01%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%
N_unmapped	3451233	3451233	3451233
N_multimapping	1495588	1495588	1495588
N_noFeature	1425649	10620565	10702335
N_ambiguous	217129	41204	39651
UnstrandedReadsAssigned:18390933 PositiveStrandReadsAssigned:9371942 NegativeStrandReadsAssigned:9291725
Dataset is classified unstranded
MeadianReadLen=76 20thPercentileLength=75 echo kmer=71
ERR4131604 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31

[quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20
[index] k-mer length: 31
[index] number of targets: 52,400
[index] number of k-mers: 62,057,036
[index] number of equivalence classes: 130,681
[quant] running in single-end mode
[quant] will process file 1: ERR4131604-trimmed.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 24,980,532 reads, 22,044,790 reads pseudoaligned
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,257 rounds

  52401 ERR4131604.ke.tsv
  34699 ERR4131604.se.tsv
  87100 total
==> ERR4131604.ke.tsv <==
target_id	length	eff_length	est_counts	tpm
Potri.005G200100.1.v4.1	2018	1919	411	11.4041
Potri.005G024800.1.v4.1	1035	936	64	3.64081
Potri.004G059700.1.v4.1	961	862	25	1.54428
Potri.007G009000.2.v4.1	1416	1317	1	0.0404304
Potri.003G141000.2.v4.1	2943	2844	374.315	7.00812
Potri.016G087400.1.v4.1	270	171	492.633	153.399
Potri.015G069301.1.v4.1	564	465	0	0
Potri.010G195200.1.v4.1	1773	1674	4	0.127233
Potri.012G127500.1.v4.1	977	878	684	41.4816

==> ERR4131604.se.tsv <==
Potri.001G166300.v4.1	1
Potri.001G448400.v4.1	14
Potri.001G233950.v4.1	0
Potri.001G122700.v4.1	169
Potri.001G212900.v4.1	836
Potri.001G182400.v4.1	3
Potri.001G256600.v4.1	0
Potri.001G040500.v4.1	6
Potri.001G416900.v4.1	14
Potri.001G452600.v4.1	3
ERR4131604 completed mapping pipeline successfully
