Starting /dee2/code/volunteer_pipeline.sh SRR12560177
    current disk space = 3056452808704
    free memory = 1419318780 
SRR12560177 SRAfilesize
c597e18d40f68f6b27539a4555a141e0  SRR12560177.sra
SRR12560177.sra file validated
SRR12560177 is single end
SRR12560177 is conventional basespace
SRR12560177 read1 length is 96-151 nt
##FastQC	0.11.5
>>Basic Statistics	pass
#Measure	Value
Filename	SRR12560177_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4000
Sequences flagged as poor quality	0
Sequence length	96-151
%GC	44
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.89375	32.0	32.0	32.0	32.0	32.0
2	31.0325	32.0	32.0	32.0	32.0	32.0
3	34.755	37.0	32.0	37.0	32.0	37.0
4	36.046	37.0	37.0	37.0	32.0	37.0
5	35.97075	37.0	37.0	37.0	32.0	37.0
6	39.2035	41.0	41.0	41.0	37.0	41.0
7	39.682	41.0	41.0	41.0	37.0	41.0
8	39.7095	41.0	41.0	41.0	37.0	41.0
9	39.3895	41.0	41.0	41.0	37.0	41.0
10-14	39.5546	41.0	41.0	41.0	37.0	41.0
15-19	39.66135	41.0	41.0	41.0	37.0	41.0
20-24	39.58755	41.0	41.0	41.0	37.0	41.0
25-29	39.163650000000004	41.0	41.0	41.0	37.0	41.0
30-34	39.14635	41.0	41.0	41.0	36.0	41.0
35-39	39.35615	41.0	41.0	41.0	37.0	41.0
40-44	39.35314999999999	41.0	41.0	41.0	37.0	41.0
45-49	39.3347	41.0	41.0	41.0	37.0	41.0
50-54	39.123149999999995	41.0	41.0	41.0	36.0	41.0
55-59	39.02765	41.0	41.0	41.0	36.0	41.0
60-64	38.7846	41.0	40.2	41.0	33.0	41.0
65-69	38.80955	41.0	40.2	41.0	35.0	41.0
70-74	38.8951	41.0	41.0	41.0	33.0	41.0
75-79	38.91760000000001	41.0	39.4	41.0	35.0	41.0
80-84	39.172000000000004	41.0	41.0	41.0	37.0	41.0
85-89	39.18145	41.0	41.0	41.0	36.0	41.0
90-94	39.3249	41.0	41.0	41.0	37.0	41.0
95-99	39.23550642142777	41.0	41.0	41.0	37.0	41.0
100-104	39.129164582291146	41.0	41.0	41.0	35.0	41.0
105-109	38.936818409204605	41.0	41.0	41.0	34.0	41.0
110-114	38.77033516758379	41.0	41.0	41.0	32.0	41.0
115-119	38.507824100220525	41.0	38.6	41.0	32.0	41.0
120-124	38.508559384759245	41.0	38.6	41.0	33.0	41.0
125-129	38.12433650475713	41.0	37.0	41.0	32.0	41.0
130-134	37.50594227178483	41.0	37.0	41.0	29.0	41.0
135-139	37.07553404227649	41.0	37.0	41.0	27.0	41.0
140-144	36.91713431146259	41.0	37.0	41.0	27.0	41.0
145-149	37.00321640942687	41.0	37.0	41.0	28.0	41.0
150-151	37.24286102717828	41.0	34.5	41.0	29.5	41.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
20	1.0
21	1.0
22	4.0
23	3.0
24	1.0
25	5.0
26	13.0
27	13.0
28	18.0
29	24.0
30	33.0
31	44.0
32	54.0
33	100.0
34	107.0
35	145.0
36	214.0
37	278.0
38	398.0
39	743.0
40	1801.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.2	12.325	14.6	47.875
2	21.475	17.675	38.6	22.25
3	19.575	24.0	23.925	32.5
4	22.975	30.475	20.925	25.624999999999996
5	22.7	32.975	23.9	20.424999999999997
6	19.2	32.925	27.275	20.599999999999998
7	14.524999999999999	26.55	40.550000000000004	18.375
8	16.475	22.875	34.8	25.85
9	17.7	21.85	33.675	26.775
10-14	19.73	29.044999999999998	26.729999999999997	24.495
15-19	20.025000000000002	28.105000000000004	27.705000000000002	24.165
20-24	20.244999999999997	27.495000000000005	27.405	24.855
25-29	19.735	28.595	28.01	23.66
30-34	19.830000000000002	28.355000000000004	27.425	24.39
35-39	19.925	27.955000000000002	27.495000000000005	24.625
40-44	20.424999999999997	28.044999999999998	27.955000000000002	23.575
45-49	20.285	27.805000000000003	27.944999999999997	23.965
50-54	20.27	27.965	28.015	23.75
55-59	19.36	28.51	27.634999999999998	24.495
60-64	20.775	27.36	27.284999999999997	24.58
65-69	20.535	27.61	27.725	24.13
70-74	20.5	27.794999999999998	27.185	24.52
75-79	20.935000000000002	27.215	27.915	23.935000000000002
80-84	20.995	27.715	27.41	23.880000000000003
85-89	20.560000000000002	27.37	27.655	24.415
90-94	20.674999999999997	27.834999999999997	27.07	24.42
95-99	20.964192838567712	27.090418083616726	28.180636127225444	23.76475295059012
100-104	20.245122561280642	27.903951975987994	27.55377688844422	24.297148574287146
105-109	20.100050025012507	26.903451725862933	28.494247123561784	24.502251125562783
110-114	20.870435217608804	27.138569284642323	27.923961980990498	24.06703351675838
115-119	21.386039529647235	27.420565424068048	27.540655491618715	23.652739554666
120-124	20.912185841594074	27.035145689396217	27.685991789326124	24.36667667968359
125-129	20.325488232348523	27.521281922884327	27.77666499749624	24.376564847270906
130-134	20.309526194530704	27.34148051687869	28.47841330261445	23.87057998597616
135-139	21.438949847186734	26.559446866075454	27.9072097800491	24.09439350668871
140-144	21.14082175287212	27.301459890633623	27.898459840465563	23.659258516028697
145-149	21.281023194437395	27.07709485865097	27.95513373597929	23.686748210932347
150-151	20.684503599076464	27.814749422789625	26.918375662094256	24.58237131603966
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	4.0
2	1.5
3	0.0
4	0.0
5	0.5
6	0.5
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.5
13	1.0
14	0.5
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.0
21	0.5
22	1.5
23	1.0
24	1.0
25	2.5
26	2.5
27	4.5
28	6.0
29	11.0
30	18.0
31	24.5
32	31.5
33	30.5
34	42.5
35	58.0
36	70.0
37	96.0
38	124.5
39	145.5
40	179.5
41	210.0
42	231.5
43	243.5
44	250.5
45	267.5
46	270.0
47	251.0
48	232.5
49	218.0
50	195.0
51	163.0
52	134.0
53	110.0
54	81.5
55	57.0
56	47.5
57	40.5
58	32.0
59	26.5
60	15.5
61	11.0
62	9.0
63	9.5
64	7.0
65	4.0
66	4.0
67	4.5
68	4.0
69	1.5
70	2.5
71	2.0
72	1.0
73	1.0
74	0.0
75	0.0
76	0.0
77	0.0
78	0.0
79	0.0
80	0.0
81	0.0
82	0.0
83	0.0
84	0.0
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	0.0
30-34	0.0
35-39	0.0
40-44	0.0
45-49	0.0
50-54	0.0
55-59	0.0
60-64	0.0
65-69	0.0
70-74	0.0
75-79	0.0
80-84	0.0
85-89	0.0
90-94	0.0
95-99	0.0
100-104	0.0
105-109	0.0
110-114	0.0
115-119	0.0
120-124	0.0
125-129	0.0
130-134	0.0
135-139	0.0
140-144	0.0
145-149	0.0
150-151	0.0
>>END_MODULE
>>Sequence Length Distribution	warn
#Length	Count
96-97	1.0
98-99	1.0
100-101	0.0
102-103	0.0
104-105	0.0
106-107	0.0
108-109	0.0
110-111	0.0
112-113	0.0
114-115	1.0
116-117	0.0
118-119	2.0
120-121	0.0
122-123	1.0
124-125	0.0
126-127	0.0
128-129	0.0
130-131	1.0
132-133	0.0
134-135	1.0
136-137	0.0
138-139	4.0
140-141	1.0
142-143	2.0
144-145	16.0
146-147	51.0
148-149	112.0
150-151	3806.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Deduplicated Percentage	96.22500000000001
#Duplication Level	Percentage of deduplicated	Percentage of total
1	96.25876851130164	92.625
2	3.5853468433359312	6.9
3	0.12990387113535984	0.375
4	0.02598077422707197	0.1
5	0.0	0.0
6	0.0	0.0
7	0.0	0.0
8	0.0	0.0
9	0.0	0.0
>10	0.0	0.0
>50	0.0	0.0
>100	0.0	0.0
>500	0.0	0.0
>1k	0.0	0.0
>5k	0.0	0.0
>10k+	0.0	0.0
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
1	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0
8	0.0	0.0	0.0	0.0	0.0
9	0.0	0.0	0.0	0.0	0.0
10-11	0.0	0.0	0.0	0.0	0.0
12-13	0.0	0.0	0.0	0.0	0.0
14-15	0.0	0.0	0.0	0.0	0.0
16-17	0.0	0.0	0.0	0.0	0.0
18-19	0.0	0.0	0.0	0.0	0.0
20-21	0.0	0.0	0.0	0.0	0.0
22-23	0.0	0.0	0.0	0.0	0.0
24-25	0.0	0.0	0.0	0.0	0.0
26-27	0.0	0.0	0.0	0.0	0.0
28-29	0.0	0.0	0.0	0.0	0.0
30-31	0.0	0.0	0.0	0.0	0.0
32-33	0.0	0.0	0.0	0.0	0.0
34-35	0.0	0.0	0.0	0.0	0.0
36-37	0.0	0.0	0.0	0.0	0.0
38-39	0.0	0.0	0.0	0.0	0.0
40-41	0.0	0.0	0.0	0.0	0.0
42-43	0.0	0.0	0.0	0.0	0.0
44-45	0.0	0.0	0.0	0.0	0.0
46-47	0.0	0.0	0.0	0.0	0.0
48-49	0.0	0.0	0.0	0.0	0.0
50-51	0.0	0.0	0.0	0.0	0.0
52-53	0.0	0.0	0.0	0.0	0.0
54-55	0.0	0.0	0.0	0.0	0.0
56-57	0.0	0.0	0.0	0.0	0.0
58-59	0.0	0.0	0.0	0.0	0.0
60-61	0.0	0.0	0.0	0.0	0.0
62-63	0.0	0.0	0.0	0.0	0.0
64-65	0.0	0.0	0.0	0.0	0.0
66-67	0.0	0.0	0.0	0.0	0.0
68-69	0.0	0.0	0.0	0.0	0.0
70-71	0.0	0.0	0.0	0.0	0.0
72-73	0.0	0.0	0.0	0.0	0.0
74-75	0.0	0.0	0.0	0.0	0.0
76-77	0.0	0.0	0.0	0.0	0.0
78-79	0.0	0.0	0.0	0.0	0.0
80-81	0.0	0.0	0.0	0.0	0.0
82-83	0.0	0.0	0.0	0.0	0.0
84-85	0.0	0.0	0.0	0.0	0.0
86-87	0.0	0.0	0.0	0.0	0.0
88-89	0.0	0.0	0.0	0.0	0.0
90-91	0.0	0.0	0.0	0.0	0.0
92-93	0.0	0.0	0.0	0.0	0.0
94-95	0.0	0.0	0.0	0.0	0.0
96-97	0.0	0.0	0.0	0.0	0.0
98-99	0.0	0.0	0.0	0.0	0.0
100-101	0.0	0.0	0.0	0.0	0.0
102-103	0.0	0.0	0.0	0.0	0.0
104-105	0.0	0.0	0.0	0.0	0.0
106-107	0.0	0.0	0.0	0.0	0.0
108-109	0.0	0.0	0.0	0.0	0.0
110-111	0.0	0.0	0.0	0.0	0.0
112-113	0.0	0.0	0.0	0.0	0.0
114-115	0.0	0.0	0.0	0.0	0.0
116-117	0.0	0.0	0.0	0.0	0.0
118-119	0.0	0.0	0.0	0.0	0.0
120-121	0.0	0.0	0.0	0.0	0.0
122-123	0.0	0.0	0.0	0.0	0.0
124-125	0.0	0.0	0.0	0.0	0.0
126-127	0.0	0.0	0.0	0.0	0.0
128-129	0.0	0.0	0.0	0.0	0.0
130-131	0.0	0.0	0.0	0.0	0.0
132-133	0.0	0.0	0.0	0.0	0.0
134-135	0.0	0.0	0.0	0.0	0.0
136-137	0.0	0.0	0.0	0.0	0.0
138-139	0.0	0.0	0.0	0.0	0.0
>>END_MODULE
>>Kmer Content	pass
>>END_MODULE
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551214 spots for SRR12560177.sra
Written 1551214 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
Read 1551201 spots for SRR12560177.sra
Written 1551201 spots for SRR12560177.sra
SRR ids: ['SRR12560177.sra']
extra args: ['--split-files', '--defline-qual', '+']
tempdir: /tmp/pfd_7x_7t27l
SRR12560177.sra spots: 31024033
blocks: [[1, 1551201], [1551202, 3102402], [3102403, 4653603], [4653604, 6204804], [6204805, 7756005], [7756006, 9307206], [9307207, 10858407], [10858408, 12409608], [12409609, 13960809], [13960810, 15512010], [15512011, 17063211], [17063212, 18614412], [18614413, 20165613], [20165614, 21716814], [21716815, 23268015], [23268016, 24819216], [24819217, 26370417], [26370418, 27921618], [27921619, 29472819], [29472820, 31024033]]
SRR12560177 file size 10242465
SRR12560177 completed basic pipeline successfully
skewer v0.2.2 [April 4, 2016]
COMMAND LINE:	skewer -f sanger -l 18 -q 10 -k inf -t 20 -o SRR12560177 SRR12560177_1.fastq
Input file:	SRR12560177_1.fastq
trimmed:	SRR12560177-trimmed.fastq

Parameters used:
-- 3' end adapter sequence (-x):	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
-- maximum error ratio allowed (-r):	0.100
-- maximum indel error ratio allowed (-d):	0.030
-- end quality threshold (-q):		10
-- minimum read length allowed after trimming (-l):	18
-- file format (-f):		Sanger/Illumina 1.8+ FASTQ 
-- minimum overlap length for adapter detection (-k):	inf
-- number of concurrent threads (-t):	20
Mon Feb 10 21:04:53 2025 >> started

Mon Feb 10 21:05:21 2025 >> done (28.137s)
31024033 reads processed; of these:
       6 ( 0.00%) short reads filtered out after trimming by size control
       0 ( 0.00%) empty reads filtered out after trimming by size control
31024027 (100.00%) reads available; of these:
    3237 ( 0.01%) trimmed reads available after processing
31020790 (99.99%) untrimmed reads available after processing

Length distribution of reads after trimming:
length	count	percentage
 18	       1	  0.00%
 19	       3	  0.00%
 20	       1	  0.00%
 21	       4	  0.00%
 22	       7	  0.00%
 23	       2	  0.00%
 24	       7	  0.00%
 25	       5	  0.00%
 26	      10	  0.00%
 27	       8	  0.00%
 28	      12	  0.00%
 29	      10	  0.00%
 30	      14	  0.00%
 31	      12	  0.00%
 32	      13	  0.00%
 33	      20	  0.00%
 34	      10	  0.00%
 35	      11	  0.00%
 36	      17	  0.00%
 37	      16	  0.00%
 38	      19	  0.00%
 39	      17	  0.00%
 40	      63	  0.00%
 41	      83	  0.00%
 42	      61	  0.00%
 43	      75	  0.00%
 44	      89	  0.00%
 45	      72	  0.00%
 46	      90	  0.00%
 47	      87	  0.00%
 48	      77	  0.00%
 49	      83	  0.00%
 50	      81	  0.00%
 51	      88	  0.00%
 52	     101	  0.00%
 53	      99	  0.00%
 54	     110	  0.00%
 55	     128	  0.00%
 56	     126	  0.00%
 57	     304	  0.00%
 58	     135	  0.00%
 59	     121	  0.00%
 60	     127	  0.00%
 61	     133	  0.00%
 62	     132	  0.00%
 63	     156	  0.00%
 64	     144	  0.00%
 65	     135	  0.00%
 66	     155	  0.00%
 67	     126	  0.00%
 68	     139	  0.00%
 69	     153	  0.00%
 70	     149	  0.00%
 71	     149	  0.00%
 72	     191	  0.00%
 73	     174	  0.00%
 74	     209	  0.00%
 75	     168	  0.00%
 76	     237	  0.00%
 77	     212	  0.00%
 78	     227	  0.00%
 79	     239	  0.00%
 80	     213	  0.00%
 81	     243	  0.00%
 82	     265	  0.00%
 83	     251	  0.00%
 84	     241	  0.00%
 85	     258	  0.00%
 86	     336	  0.00%
 87	     291	  0.00%
 88	     292	  0.00%
 89	     302	  0.00%
 90	     328	  0.00%
 91	     413	  0.00%
 92	     361	  0.00%
 93	     321	  0.00%
 94	     392	  0.00%
 95	     391	  0.00%
 96	     424	  0.00%
 97	     453	  0.00%
 98	     463	  0.00%
 99	     527	  0.00%
100	     504	  0.00%
101	     615	  0.00%
102	     592	  0.00%
103	     609	  0.00%
104	     712	  0.00%
105	     738	  0.00%
106	     712	  0.00%
107	     799	  0.00%
108	     828	  0.00%
109	     844	  0.00%
110	     935	  0.00%
111	     938	  0.00%
112	     965	  0.00%
113	    1072	  0.00%
114	    1127	  0.00%
115	    1173	  0.00%
116	    1155	  0.00%
117	    1249	  0.00%
118	    1312	  0.00%
119	    1395	  0.00%
120	    1400	  0.00%
121	    1461	  0.00%
122	    1613	  0.01%
123	    1690	  0.01%
124	    1809	  0.01%
125	    1820	  0.01%
126	    2066	  0.01%
127	    2108	  0.01%
128	    2323	  0.01%
129	    2555	  0.01%
130	    2693	  0.01%
131	    2916	  0.01%
132	    3380	  0.01%
133	    3824	  0.01%
134	    4358	  0.01%
135	    5104	  0.02%
136	    5810	  0.02%
137	    6826	  0.02%
138	    7651	  0.02%
139	    9630	  0.03%
140	   10151	  0.03%
141	   12922	  0.04%
142	   17136	  0.06%
143	   25066	  0.08%
144	   38994	  0.13%
145	   58398	  0.19%
146	   80790	  0.26%
147	  120348	  0.39%
148	  239075	  0.77%
149	  476044	  1.53%
150	 2373502	  7.65%
151	27469878	 88.54%
31024027 reads passed initial QC


criterion=sequence-density
sequence-density=0.11
sequence-density-rank=1
fanout-score=7.91
fanout-score-rank=14
prefix-density=0.19
prefix-fanout=4.7
sequence=CCTCTGCTGGTCTGGGGGAATGCC


criterion=fanout-score
sequence-density=0.06
sequence-density-rank=25
fanout-score=319.99
fanout-score-rank=1
prefix-density=0.66
prefix-fanout=31.1
sequence=TCTTCTTCTTCCT
                                 Started job on |	Feb 10 21:05:50
                             Started mapping on |	Feb 10 21:05:50
                                    Finished on |	Feb 10 21:07:33
       Mapping speed, Million of reads per hour |	1084.33

                          Number of input reads |	31024027
                      Average input read length |	150
                                    UNIQUE READS:
                   Uniquely mapped reads number |	28129215
                        Uniquely mapped reads % |	90.67%
                          Average mapped length |	150.32
                       Number of splices: Total |	13582381
            Number of splices: Annotated (sjdb) |	13381201
                       Number of splices: GT/AG |	13344348
                       Number of splices: GC/AG |	192843
                       Number of splices: AT/AC |	10943
               Number of splices: Non-canonical |	34247
                      Mismatch rate per base, % |	0.42%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.65
                        Insertion rate per base |	0.02%
                       Insertion average length |	2.29
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	781683
             % of reads mapped to multiple loci |	2.52%
        Number of reads mapped to too many loci |	192995
             % of reads mapped to too many loci |	0.62%
                                  UNMAPPED READS:
       % of reads unmapped: too many mismatches |	0.00%
                 % of reads unmapped: too short |	6.09%
                     % of reads unmapped: other |	0.10%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%
N_unmapped	2113129	2113129	2113129
N_multimapping	781683	781683	781683
N_noFeature	816077	27887861	932410
N_ambiguous	214637	1540	88429
UnstrandedReadsAssigned:27098501 PositiveStrandReadsAssigned:239814 NegativeStrandReadsAssigned:27108376
Dataset is classified negative stranded
MeadianReadLen=151 20thPercentileLength=151 echo kmer=147
SRR12560177 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31

[quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20
[index] k-mer length: 31
[index] number of targets: 52,400
[index] number of k-mers: 62,057,036
[index] number of equivalence classes: 130,681
[quant] running in single-end mode
[quant] will process file 1: SRR12560177-trimmed.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 31,024,027 reads, 27,478,378 reads pseudoaligned
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,199 rounds

  52401 SRR12560177.ke.tsv
  34699 SRR12560177.se.tsv
  87100 total
==> SRR12560177.ke.tsv <==
target_id	length	eff_length	est_counts	tpm
Potri.005G200100.1.v4.1	2018	1919	2047	63.2842
Potri.005G024800.1.v4.1	1035	936	183	11.5992
Potri.004G059700.1.v4.1	961	862	91	6.26306
Potri.007G009000.2.v4.1	1416	1317	0	0
Potri.003G141000.2.v4.1	2943	2844	936.517	19.5361
Potri.016G087400.1.v4.1	270	171	397.431	137.885
Potri.015G069301.1.v4.1	564	465	0	0
Potri.010G195200.1.v4.1	1773	1674	307.457	10.8963
Potri.012G127500.1.v4.1	977	878	8856	598.405

==> SRR12560177.se.tsv <==
Potri.001G166300.v4.1	0
Potri.001G448400.v4.1	82
Potri.001G233950.v4.1	1
Potri.001G122700.v4.1	128
Potri.001G212900.v4.1	3
Potri.001G182400.v4.1	5
Potri.001G256600.v4.1	0
Potri.001G040500.v4.1	0
Potri.001G416900.v4.1	542
Potri.001G452600.v4.1	458
SRR12560177 completed mapping pipeline successfully
