Starting /dee2/code/volunteer_pipeline.sh SRR5423382 current disk space = 3049254797312 free memory = 1582577716 SRR5423382 SRAfilesize cadb5d54c16944c40f808a5fd473ba75 SRR5423382.sra SRR5423382.sra file validated SRR5423382 is single end SRR5423382 is conventional basespace SRR5423382 read1 length is 52 nt ##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR5423382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.265 31.0 31.0 34.0 28.0 34.0 2 31.56825 31.0 31.0 34.0 30.0 34.0 3 31.679 31.0 31.0 34.0 30.0 34.0 4 32.609 35.0 32.0 37.0 22.0 37.0 5 34.5695 35.0 35.0 37.0 30.0 37.0 6 34.88 35.0 35.0 37.0 32.0 37.0 7 35.00725 36.0 35.0 37.0 32.0 37.0 8 35.0305 36.0 35.0 37.0 32.0 37.0 9 36.8985 39.0 37.0 39.0 33.0 39.0 10 36.691 39.0 35.0 39.0 32.0 39.0 11 36.51475 39.0 35.0 39.0 32.0 39.0 12 36.611 39.0 35.0 39.0 32.0 39.0 13 36.5325 39.0 35.0 39.0 32.0 39.0 14 37.58275 39.0 37.0 41.0 32.0 41.0 15 37.79225 40.0 37.0 41.0 32.0 41.0 16 37.706 40.0 37.0 41.0 32.0 41.0 17 37.27675 39.0 36.0 41.0 31.0 41.0 18 37.77375 40.0 37.0 41.0 32.0 41.0 19 37.698 40.0 37.0 41.0 32.0 41.0 20 37.26325 39.0 36.0 41.0 31.0 41.0 21 37.764 39.0 37.0 41.0 32.0 41.0 22 37.72225 39.0 37.0 41.0 32.0 41.0 23 37.67675 39.0 37.0 41.0 32.0 41.0 24 37.73225 39.0 37.0 41.0 32.0 41.0 25 37.507 39.0 36.0 41.0 32.0 41.0 26 37.33975 39.0 36.0 41.0 31.0 41.0 27 37.18525 39.0 36.0 41.0 31.0 41.0 28 37.51825 39.0 37.0 41.0 32.0 41.0 29 37.2725 39.0 36.0 41.0 31.0 41.0 30 37.32175 39.0 36.0 41.0 31.0 41.0 31 37.374 39.0 37.0 41.0 31.0 41.0 32 37.42275 39.0 36.0 41.0 32.0 41.0 33 37.301 39.0 36.0 41.0 31.0 41.0 34 37.366 39.0 36.0 41.0 31.0 41.0 35 37.20775 39.0 36.0 41.0 31.0 41.0 36 37.04075 39.0 36.0 41.0 30.0 41.0 37 37.11025 39.0 36.0 40.0 31.0 41.0 38 37.009 39.0 36.0 41.0 30.0 41.0 39 37.10375 39.0 36.0 41.0 31.0 41.0 40 36.80675 39.0 35.0 40.0 30.0 41.0 41 36.64675 39.0 35.0 40.0 30.0 41.0 42 36.497 39.0 35.0 40.0 30.0 41.0 43 36.565 39.0 35.0 40.0 30.0 41.0 44 36.5285 39.0 35.0 40.0 30.0 41.0 45 36.6975 39.0 35.0 40.0 30.0 41.0 46 36.6355 39.0 35.0 40.0 30.0 41.0 47 36.565 39.0 35.0 40.0 30.0 41.0 48 36.196 38.0 35.0 40.0 29.0 41.0 49 36.43625 38.0 35.0 40.0 30.0 41.0 50 36.44675 38.0 35.0 40.0 30.0 41.0 51 36.285 39.0 35.0 40.0 29.0 41.0 52 35.42175 38.0 33.0 40.0 27.0 41.0 >>END_MODULE >>Per tile sequence quality pass #Tile Base Mean 1114 1 0.0 1114 2 0.0 1114 3 0.0 1114 4 0.0 1114 5 0.0 1114 6 0.0 1114 7 0.0 1114 8 0.0 1114 9 0.0 1114 10 0.0 1114 11 0.0 1114 12 0.0 1114 13 0.0 1114 14 0.0 1114 15 0.0 1114 16 0.0 1114 17 0.0 1114 18 0.0 1114 19 0.0 1114 20 0.0 1114 21 0.0 1114 22 0.0 1114 23 0.0 1114 24 0.0 1114 25 0.0 1114 26 0.0 1114 27 0.0 1114 28 0.0 1114 29 0.0 1114 30 0.0 1114 31 0.0 1114 32 0.0 1114 33 0.0 1114 34 0.0 1114 35 0.0 1114 36 0.0 1114 37 0.0 1114 38 0.0 1114 39 0.0 1114 40 0.0 1114 41 0.0 1114 42 0.0 1114 43 0.0 1114 44 0.0 1114 45 0.0 1114 46 0.0 1114 47 0.0 1114 48 0.0 1114 49 0.0 1114 50 0.0 1114 51 0.0 1114 52 0.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 1.0 22 2.0 23 6.0 24 9.0 25 15.0 26 27.0 27 43.0 28 59.0 29 66.0 30 89.0 31 117.0 32 147.0 33 201.0 34 234.0 35 319.0 36 395.0 37 540.0 38 719.0 39 1006.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.23242431823868 14.135601701275958 5.7042782086564925 36.92769577182887 2 19.75 15.9 36.4 27.950000000000003 3 19.8 20.275000000000002 24.3 35.625 4 25.874999999999996 27.3 20.8 26.025 5 24.5 33.6 22.425 19.475 6 20.1 36.275 22.85 20.775 7 14.674999999999999 24.975 40.65 19.7 8 17.4 21.975 31.775 28.849999999999998 9 19.475 21.05 31.424999999999997 28.050000000000004 10 19.325 37.925 23.7 19.05 11 22.6 30.099999999999998 20.4 26.900000000000002 12 21.575 24.725 25.650000000000002 28.050000000000004 13 20.8 28.875 27.224999999999998 23.1 14 20.1 29.375 26.700000000000003 23.825 15 20.375 27.85 25.424999999999997 26.35 16 20.825 28.499999999999996 25.15 25.525 17 22.05 27.900000000000002 25.575 24.474999999999998 18 21.25 27.375 26.0 25.374999999999996 19 22.175 26.150000000000002 25.374999999999996 26.3 20 21.15 27.200000000000003 26.700000000000003 24.95 21 21.625 26.900000000000002 26.325 25.15 22 20.75 27.500000000000004 25.924999999999997 25.825 23 21.775 29.25 23.400000000000002 25.575 24 22.125 27.575 25.2 25.1 25 22.275 28.65 24.025 25.05 26 22.425 26.825 25.525 25.224999999999998 27 21.375 26.575 26.150000000000002 25.900000000000002 28 21.9 27.85 26.125 24.125 29 19.425 29.299999999999997 27.3 23.974999999999998 30 20.4 25.8 26.55 27.250000000000004 31 20.525 27.474999999999998 26.05 25.95 32 21.375 26.1 27.250000000000004 25.275 33 20.275000000000002 26.400000000000002 27.400000000000002 25.924999999999997 34 22.35 27.55 25.775 24.325 35 21.025 27.675 24.2 27.1 36 21.175 27.875 23.95 27.0 37 21.7 26.625 26.35 25.324999999999996 38 20.724999999999998 27.525 25.45 26.3 39 21.95 27.474999999999998 24.525 26.05 40 21.025 27.725 26.85 24.4 41 22.1 26.3 25.424999999999997 26.174999999999997 42 18.95 26.400000000000002 27.85 26.8 43 20.65 28.125 25.95 25.275 44 22.8 26.8 25.674999999999997 24.725 45 21.85 27.1 24.725 26.325 46 23.375 25.15 25.924999999999997 25.55 47 23.425 27.175 25.324999999999996 24.075 48 22.275 26.5 24.2 27.025 49 21.55 27.3 25.1 26.05 50 21.9 27.0 25.674999999999997 25.424999999999997 51 22.7 25.75 24.474999999999998 27.075 52 23.775 25.924999999999997 25.025 25.275 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8.0 1 4.0 2 0.0 3 0.0 4 0.0 5 1.0 6 2.0 7 2.5 8 3.0 9 2.5 10 2.0 11 1.0 12 0.0 13 0.0 14 0.5 15 1.0 16 1.5 17 2.0 18 2.5 19 3.0 20 7.0 21 11.0 22 10.5 23 10.0 24 15.0 25 20.0 26 23.5 27 27.0 28 37.0 29 47.0 30 51.5 31 56.0 32 72.5 33 89.0 34 107.5 35 126.0 36 151.0 37 176.0 38 194.5 39 223.0 40 233.0 41 238.0 42 243.0 43 281.0 44 319.0 45 312.5 46 306.0 47 297.5 48 289.0 49 294.0 50 299.0 51 314.5 52 330.0 53 332.0 54 334.0 55 269.0 56 204.0 57 191.5 58 179.0 59 173.5 60 168.0 61 150.0 62 132.0 63 97.0 64 52.0 65 42.0 66 34.5 67 27.0 68 22.5 69 18.0 70 11.0 71 4.0 72 4.0 73 4.0 74 4.5 75 5.0 76 3.5 77 2.0 78 2.5 79 3.0 80 1.5 81 0.0 82 0.5 83 1.0 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.075 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.925 #Duplication Level Percentage of deduplicated Percentage of total 1 93.25274107393872 82.92500000000001 2 4.413831880798426 7.85 3 0.9839752600506044 2.625 4 0.5903851560303627 2.1 5 0.1967950520101209 0.8750000000000001 6 0.2530222097272983 1.35 7 0.028113578858588697 0.17500000000000002 8 0.1967950520101209 1.4000000000000001 9 0.056227157717177394 0.44999999999999996 >10 0.028113578858588697 0.25 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCCGTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTAC 10 0.25 No Hit CCAGCAACGGGCTCGATGTCGTAGCATCGTCCCTTATAACGATCAAGACTGG 9 0.22499999999999998 No Hit AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 9 0.22499999999999998 No Hit GTCCCTCATTACGAGCTTGTACACATGCTTCTAGAGCTACTCGATTAGCAAC 8 0.2 No Hit CTCGTATTTTCCCCTCTGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTG 8 0.2 No Hit GTCCCTTATAACGATCAAGACTGGTAAGCCCGTCGGTCCACACAGTTGTCCA 8 0.2 No Hit GCCAGACTAAGCAATAAAGTACCTCGTATTTTCCCCTCTGCCTCGGGTTGTC 8 0.2 No Hit GGGTAAGCTACATAAGCAATAAATTGATTTTCTTCTCCAGCAACGGGCTCGA 8 0.2 No Hit CGTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACTGC 8 0.2 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8 0.2 No Hit GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAA 7 0.17500000000000002 No Hit GGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAGT 6 0.15 No Hit GTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACTGCG 6 0.15 No Hit CCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATT 6 0.15 No Hit GGGGTAAGCTACATAAGCAATAAATTGATTTTCTTCTCCAGCAACGGGCTCG 6 0.15 No Hit CCCGTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACT 6 0.15 No Hit CCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 6 0.15 No Hit GTTCAATTAGATCAGCCCATCAGGCCATGCGGATCCAGGTGGCACCGGCCCG 6 0.15 No Hit GTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACTGCGGCCC 6 0.15 No Hit ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGC 6 0.15 No Hit CAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTGA 5 0.125 No Hit ACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 5 0.125 No Hit CACAAATTTTGACGTAGGCTCTCCCTCTTGGGGAGACCTTAGACCAGCACCC 5 0.125 No Hit GTGCTCAGCCTGGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGA 5 0.125 No Hit CAGCAACGGGCTCGATGTCGTAGCATCGTCCCTTATAACGATCAAGACTGGT 5 0.125 No Hit GGGGTCGGTCCATGGATTTTCCTTCCTTTTTCCGCATTTCGCTAAAGGGTTG 5 0.125 No Hit CTCAGCCTGGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGC 5 0.125 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 0.0 0.0 23 0.0 0.0 0.0 0.0 0.0 24 0.0 0.0 0.0 0.0 0.0 25 0.0 0.0 0.0 0.0 0.0 26 0.0 0.0 0.0 0.0 0.0 27 0.0 0.0 0.0 0.0 0.0 28 0.0 0.0 0.0 0.0 0.0 29 0.0 0.0 0.0 0.0 0.0 30 0.0 0.0 0.0 0.0 0.0 31 0.0 0.0 0.0 0.0 0.0 32 0.0 0.0 0.0 0.0 0.0 33 0.0 0.0 0.0 0.0 0.0 34 0.0 0.0 0.0 0.0 0.0 35 0.0 0.0 0.0 0.0 0.0 36 0.0 0.0 0.0 0.0 0.0 37 0.0 0.0 0.0 0.0 0.0 38 0.0 0.0 0.0 0.0 0.0 39 0.0 0.0 0.0 0.0 0.0 40 0.0 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content pass >>END_MODULE Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra Read 200000 spots for SRR5423382.sra Written 200000 spots for SRR5423382.sra SRR ids: ['SRR5423382.sra'] extra args: ['--split-files', '--defline-qual', '+'] tempdir: /tmp/pfd_leu23vmr SRR5423382.sra spots: 4000000 blocks: [[1, 200000], [200001, 400000], [400001, 600000], [600001, 800000], [800001, 1000000], [1000001, 1200000], [1200001, 1400000], [1400001, 1600000], [1600001, 1800000], [1800001, 2000000], [2000001, 2200000], [2200001, 2400000], [2400001, 2600000], [2600001, 2800000], [2800001, 3000000], [3000001, 3200000], [3200001, 3400000], [3400001, 3600000], [3600001, 3800000], [3800001, 4000000]] SRR5423382 file size 704002 SRR5423382 completed basic pipeline successfully skewer v0.2.2 [April 4, 2016] COMMAND LINE: skewer -f sanger -l 18 -q 10 -k inf -t 20 -o SRR5423382 SRR5423382_1.fastq Input file: SRR5423382_1.fastq trimmed: SRR5423382-trimmed.fastq Parameters used: -- 3' end adapter sequence (-x): AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC -- maximum error ratio allowed (-r): 0.100 -- maximum indel error ratio allowed (-d): 0.030 -- end quality threshold (-q): 10 -- minimum read length allowed after trimming (-l): 18 -- file format (-f): Sanger/Illumina 1.8+ FASTQ -- minimum overlap length for adapter detection (-k): inf -- number of concurrent threads (-t): 20 Wed Feb 12 08:25:05 2025 >> started Wed Feb 12 08:25:08 2025 >> done (2.689s) 4000000 reads processed; of these: 96 ( 0.00%) short reads filtered out after trimming by size control 900 ( 0.02%) empty reads filtered out after trimming by size control 3999004 (99.98%) reads available; of these: 84864 ( 2.12%) trimmed reads available after processing 3914140 (97.88%) untrimmed reads available after processing Length distribution of reads after trimming: length count percentage 18 8 0.00% 19 4 0.00% 20 2 0.00% 21 1 0.00% 22 7 0.00% 23 3 0.00% 24 7 0.00% 25 4 0.00% 26 6 0.00% 27 5 0.00% 28 8 0.00% 29 12 0.00% 30 13 0.00% 31 13 0.00% 32 17 0.00% 33 18 0.00% 34 36 0.00% 35 33 0.00% 36 42 0.00% 37 45 0.00% 38 58 0.00% 39 85 0.00% 40 80 0.00% 41 116 0.00% 42 171 0.00% 43 188 0.00% 44 332 0.01% 45 477 0.01% 46 617 0.02% 47 1161 0.03% 48 1746 0.04% 49 3405 0.09% 50 10324 0.26% 51 65820 1.65% 52 3914140 97.88% 3999004 reads passed initial QC criterion=sequence-density sequence-density=0.38 sequence-density-rank=1 fanout-score=1.90 fanout-score-rank=27 prefix-density=0.36 prefix-fanout=1.9 sequence=TGGCACCGGCCCGTAATCCTTCCACTGCCAGGAGCGGGAGGTGATCGCTGCTCTGTGAGACCAGCCTCACGCTGTGCCCTCCCCTCTAGGAGCCACGACACC criterion=fanout-score sequence-density=0.04 sequence-density-rank=21 fanout-score=12.46 fanout-score-rank=1 prefix-density=0.20 prefix-fanout=2.6 sequence=GAGCTTCACCGTGTATGCTGCCATTGCTTTAACACGTCCTCCTCGACTGGCTTTCAAGCCAAGAAGAGACTCCCCCACGTTGGGAAGTGCCCGTAGGCTTGTCACTGGCACCCGGCGAGTAAACGATGTGCTGACCATGGCGCTGGAGAGGGCTGCTGTGGTGGCCAT Started job on | Feb 12 08:25:21 Started mapping on | Feb 12 08:25:21 Finished on | Feb 12 08:25:27 Mapping speed, Million of reads per hour | 2399.40 Number of input reads | 3999004 Average input read length | 51 UNIQUE READS: Uniquely mapped reads number | 3006015 Uniquely mapped reads % | 75.17% Average mapped length | 51.80 Number of splices: Total | 258312 Number of splices: Annotated (sjdb) | 255002 Number of splices: GT/AG | 250424 Number of splices: GC/AG | 6381 Number of splices: AT/AC | 852 Number of splices: Non-canonical | 655 Mismatch rate per base, % | 0.38% Deletion rate per base | 0.01% Deletion average length | 2.32 Insertion rate per base | 0.00% Insertion average length | 1.32 MULTI-MAPPING READS: Number of reads mapped to multiple loci | 841850 % of reads mapped to multiple loci | 21.05% Number of reads mapped to too many loci | 74528 % of reads mapped to too many loci | 1.86% UNMAPPED READS: % of reads unmapped: too many mismatches | 0.00% % of reads unmapped: too short | 1.80% % of reads unmapped: other | 0.11% CHIMERIC READS: Number of chimeric reads | 0 % of chimeric reads | 0.00% N_unmapped 151139 151139 151139 N_multimapping 841850 841850 841850 N_noFeature 454469 2934840 514696 N_ambiguous 22095 141 11021 UnstrandedReadsAssigned:2529451 PositiveStrandReadsAssigned:71034 NegativeStrandReadsAssigned:2480298 Dataset is classified negative stranded MeadianReadLen=52 20thPercentileLength=52 echo kmer=47 SRR5423382 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31 [quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20 [index] k-mer length: 31 [index] number of targets: 52,400 [index] number of k-mers: 62,057,036 [index] number of equivalence classes: 130,681 [quant] running in single-end mode [quant] will process file 1: SRR5423382-trimmed.fastq [quant] finding pseudoalignments for the reads ... done [quant] processed 3,999,004 reads, 3,140,179 reads pseudoaligned [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,066 rounds 52401 SRR5423382.ke.tsv 34699 SRR5423382.se.tsv 87100 total ==> SRR5423382.ke.tsv <== target_id length eff_length est_counts tpm Potri.005G200100.1.v4.1 2018 1919 85 11.8704 Potri.005G024800.1.v4.1 1035 936 5 1.43158 Potri.004G059700.1.v4.1 961 862 6 1.86537 Potri.007G009000.2.v4.1 1416 1317 0 0 Potri.003G141000.2.v4.1 2943 2844 61.3374 5.77986 Potri.016G087400.1.v4.1 270 171 21 32.9113 Potri.015G069301.1.v4.1 564 465 0 0 Potri.010G195200.1.v4.1 1773 1674 2 0.320181 Potri.012G127500.1.v4.1 977 878 6 1.83138 ==> SRR5423382.se.tsv <== Potri.001G166300.v4.1 0 Potri.001G448400.v4.1 3 Potri.001G233950.v4.1 0 Potri.001G122700.v4.1 27 Potri.001G212900.v4.1 3 Potri.001G182400.v4.1 0 Potri.001G256600.v4.1 0 Potri.001G040500.v4.1 4 Potri.001G416900.v4.1 0 Potri.001G452600.v4.1 0 SRR5423382 completed mapping pipeline successfully