Starting /dee2/code/volunteer_pipeline.sh SRR5423435
    current disk space = 3051300184064
    free memory = 1579183956 
SRR5423435 SRAfilesize
35e4f4057cb2d94301ca8171653f840a  SRR5423435.sra
SRR5423435.sra file validated
SRR5423435 is single end
SRR5423435 is conventional basespace
SRR5423435 read1 length is 52 nt
##FastQC	0.11.5
>>Basic Statistics	pass
#Measure	Value
Filename	SRR5423435_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4000
Sequences flagged as poor quality	0
Sequence length	52
%GC	47
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.093	33.0	31.0	34.0	30.0	34.0
2	32.17475	34.0	31.0	34.0	30.0	34.0
3	32.21525	34.0	31.0	34.0	30.0	34.0
4	35.61925	37.0	35.0	37.0	33.0	37.0
5	35.64875	37.0	35.0	37.0	33.0	37.0
6	35.68325	37.0	35.0	37.0	33.0	37.0
7	35.70225	37.0	35.0	37.0	33.0	37.0
8	35.64525	37.0	35.0	37.0	33.0	37.0
9	37.32675	39.0	37.0	39.0	34.0	39.0
10	37.3965	39.0	37.0	39.0	34.0	39.0
11	37.355	39.0	37.0	39.0	34.0	39.0
12	26.7895	35.0	11.0	39.0	10.0	39.0
13	31.84575	35.0	27.0	39.0	17.0	39.0
14	36.17375	37.0	34.0	40.0	31.0	41.0
15	37.52	38.0	36.0	40.0	33.0	41.0
16	38.085	39.0	37.0	40.0	33.0	41.0
17	38.04225	40.0	37.0	41.0	33.0	41.0
18	38.175	40.0	38.0	41.0	33.0	41.0
19	38.53725	40.0	38.0	41.0	34.0	41.0
20	38.52	40.0	38.0	41.0	34.0	41.0
21	38.42725	40.0	38.0	41.0	34.0	41.0
22	38.48875	40.0	38.0	41.0	34.0	41.0
23	38.3265	40.0	38.0	41.0	34.0	41.0
24	38.4105	40.0	38.0	41.0	34.0	41.0
25	38.317	40.0	38.0	41.0	34.0	41.0
26	38.26625	40.0	38.0	41.0	34.0	41.0
27	38.36825	40.0	38.0	41.0	34.0	41.0
28	38.12925	40.0	38.0	41.0	33.0	41.0
29	38.179	40.0	38.0	41.0	33.0	41.0
30	38.149	40.0	38.0	41.0	33.0	41.0
31	38.13275	40.0	38.0	41.0	33.0	41.0
32	38.0085	40.0	37.0	41.0	33.0	41.0
33	37.92375	40.0	37.0	41.0	33.0	41.0
34	38.05125	40.0	37.0	41.0	33.0	41.0
35	38.05775	40.0	38.0	41.0	33.0	41.0
36	37.82125	40.0	37.0	41.0	32.0	41.0
37	37.62425	40.0	37.0	41.0	32.0	41.0
38	37.715	40.0	37.0	41.0	32.0	41.0
39	37.595	40.0	37.0	41.0	32.0	41.0
40	37.428	40.0	37.0	41.0	31.0	41.0
41	37.5005	40.0	37.0	41.0	31.0	41.0
42	37.476	40.0	37.0	41.0	32.0	41.0
43	37.416	40.0	37.0	41.0	31.0	41.0
44	37.262	40.0	36.0	41.0	31.0	41.0
45	37.37675	40.0	37.0	41.0	31.0	41.0
46	37.059	40.0	36.0	41.0	30.0	41.0
47	37.09175	39.0	36.0	41.0	31.0	41.0
48	37.03	39.0	36.0	41.0	30.0	41.0
49	37.079	39.0	36.0	41.0	31.0	41.0
50	36.94175	39.0	36.0	41.0	31.0	41.0
51	36.7495	39.0	35.0	41.0	30.0	41.0
52	35.3485	38.0	33.0	40.0	26.0	41.0
>>END_MODULE
>>Per tile sequence quality	pass
#Tile	Base	Mean
2308	1	0.0
2308	2	0.0
2308	3	0.0
2308	4	0.0
2308	5	0.0
2308	6	0.0
2308	7	0.0
2308	8	0.0
2308	9	0.0
2308	10	0.0
2308	11	0.0
2308	12	0.0
2308	13	0.0
2308	14	0.0
2308	15	0.0
2308	16	0.0
2308	17	0.0
2308	18	0.0
2308	19	0.0
2308	20	0.0
2308	21	0.0
2308	22	0.0
2308	23	0.0
2308	24	0.0
2308	25	0.0
2308	26	0.0
2308	27	0.0
2308	28	0.0
2308	29	0.0
2308	30	0.0
2308	31	0.0
2308	32	0.0
2308	33	0.0
2308	34	0.0
2308	35	0.0
2308	36	0.0
2308	37	0.0
2308	38	0.0
2308	39	0.0
2308	40	0.0
2308	41	0.0
2308	42	0.0
2308	43	0.0
2308	44	0.0
2308	45	0.0
2308	46	0.0
2308	47	0.0
2308	48	0.0
2308	49	0.0
2308	50	0.0
2308	51	0.0
2308	52	0.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
18	1.0
19	0.0
20	1.0
21	5.0
22	1.0
23	4.0
24	9.0
25	15.0
26	22.0
27	31.0
28	36.0
29	49.0
30	62.0
31	91.0
32	124.0
33	151.0
34	212.0
35	290.0
36	349.0
37	595.0
38	996.0
39	953.0
40	3.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	38.175	10.925	5.375	45.525
2	23.45	14.075	35.075	27.400000000000002
3	21.15	18.675	23.0	37.175000000000004
4	25.45	25.874999999999996	20.225	28.449999999999996
5	25.124999999999996	31.225	23.599999999999998	20.05
6	19.5	33.35	24.8	22.35
7	15.675	24.075	40.400000000000006	19.85
8	18.3	22.625	30.575000000000003	28.499999999999996
9	17.224999999999998	21.525	34.525	26.724999999999998
10	18.325	37.6	23.875	20.200000000000003
11	22.25	29.299999999999997	21.775	26.674999999999997
12	25.900000000000002	31.324999999999996	19.05	23.724999999999998
13	20.849999999999998	27.275	27.075	24.8
14	20.849999999999998	27.950000000000003	27.175	24.025
15	20.974999999999998	25.650000000000002	28.125	25.25
16	21.65	27.425	25.974999999999998	24.95
17	21.45	26.450000000000003	27.075	25.025
18	20.974999999999998	26.400000000000002	26.825	25.8
19	21.775	26.724999999999998	25.775	25.724999999999998
20	21.525	28.249999999999996	25.8	24.425
21	19.900000000000002	27.750000000000004	26.424999999999997	25.924999999999997
22	20.674999999999997	28.625	23.825	26.875
23	20.974999999999998	28.475	25.55	25.0
24	21.025	28.225	26.05	24.7
25	21.675	27.05	24.55	26.724999999999998
26	21.224999999999998	26.424999999999997	27.325	25.025
27	21.0	27.275	26.400000000000002	25.324999999999996
28	21.725	26.525	26.55	25.2
29	20.25	28.499999999999996	26.224999999999998	25.025
30	20.9	25.825	25.7	27.575
31	21.0	28.075	26.424999999999997	24.5
32	21.2	28.525	26.525	23.75
33	21.525	26.375	26.55	25.55
34	18.975	27.175	27.875	25.974999999999998
35	20.674999999999997	26.825	25.775	26.724999999999998
36	19.875	27.525	24.525	28.075
37	20.775	26.724999999999998	25.575	26.924999999999997
38	22.7	25.324999999999996	25.2	26.775
39	20.95	26.275	25.7	27.075
40	19.75	27.275	26.5	26.474999999999998
41	21.7	27.425	24.875	26.0
42	20.575	24.975	27.025	27.425
43	22.625	26.55	24.4	26.424999999999997
44	22.775000000000002	27.474999999999998	25.25	24.5
45	22.725	24.9	26.825	25.55
46	22.625	26.474999999999998	26.325	24.575
47	22.875	27.075	24.525	25.525
48	23.45	25.95	23.775	26.825
49	20.205051262815704	26.85671417854464	25.681420355088775	27.25681420355089
50	21.825	27.275	24.7	26.200000000000003
51	22.13053263315829	26.431607901975497	24.956239059764943	26.481620405101275
52	22.425	25.424999999999997	25.474999999999998	26.674999999999997
>>END_MODULE
>>Per sequence GC content	fail
#GC Content	Count
0	0.0
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.5
10	1.0
11	0.5
12	0.0
13	0.0
14	1.0
15	2.0
16	3.0
17	4.0
18	3.0
19	2.0
20	3.0
21	4.0
22	5.0
23	6.0
24	9.5
25	13.0
26	16.5
27	20.0
28	28.0
29	36.0
30	45.5
31	55.0
32	68.5
33	82.0
34	90.0
35	98.0
36	124.5
37	151.0
38	185.5
39	228.0
40	236.0
41	249.5
42	263.0
43	301.5
44	340.0
45	335.0
46	330.0
47	335.5
48	341.0
49	327.5
50	314.0
51	334.0
52	354.0
53	334.0
54	314.0
55	272.5
56	231.0
57	205.5
58	180.0
59	147.5
60	115.0
61	118.5
62	122.0
63	92.5
64	57.0
65	51.0
66	33.0
67	15.0
68	13.5
69	12.0
70	12.0
71	12.0
72	9.0
73	6.0
74	4.0
75	2.0
76	2.0
77	2.0
78	2.5
79	3.0
80	1.5
81	0.0
82	0.0
83	0.0
84	0.0
85	0.0
86	0.0
87	0.0
88	0.0
89	0.0
90	0.0
91	0.0
92	0.0
93	0.0
94	0.0
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0
20	0.0
21	0.0
22	0.0
23	0.0
24	0.0
25	0.0
26	0.0
27	0.0
28	0.0
29	0.0
30	0.0
31	0.0
32	0.0
33	0.0
34	0.0
35	0.0
36	0.0
37	0.0
38	0.0
39	0.0
40	0.0
41	0.0
42	0.0
43	0.0
44	0.0
45	0.0
46	0.0
47	0.0
48	0.0
49	0.025
50	0.0
51	0.025
52	0.0
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
52	4000.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Deduplicated Percentage	92.72500000000001
#Duplication Level	Percentage of deduplicated	Percentage of total
1	95.38959288217849	88.44999999999999
2	3.18145052574818	5.8999999999999995
3	0.6740361283364789	1.875
4	0.37746023186842814	1.4000000000000001
5	0.13480722566729578	0.625
6	0.05392289026691831	0.3
7	0.026961445133459154	0.17500000000000002
8	0.13480722566729578	1.0
9	0.0	0.0
>10	0.026961445133459154	0.27499999999999997
>50	0.0	0.0
>100	0.0	0.0
>500	0.0	0.0
>1k	0.0	0.0
>5k	0.0	0.0
>10k+	0.0	0.0
>>END_MODULE
>>Overrepresented sequences	warn
#Sequence	Count	Percentage	Possible Source
CCCGTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACT	11	0.27499999999999997	No Hit
GTCCCTCATTACGAGCTTGTACACATGCTTCTAGAGCTACTCGATTAGCAAC	8	0.2	No Hit
CTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTGTACTTCAAGGCGGCCC	8	0.2	No Hit
CTACGATATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGC	8	0.2	No Hit
GGGGTAAGCTACATAAGCAATAAATTGATTTTCTTCTCCAGCAACGGGCTCG	8	0.2	No Hit
CGTCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACTGC	8	0.2	No Hit
ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGC	7	0.17500000000000002	No Hit
CTCCAGCAACGGGCTCGATGTCGTAGCATCGTCCCTTATAACGATCAAGACT	6	0.15	No Hit
GTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTAAAAGTA	6	0.15	No Hit
GCTCAGCCTGGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGG	5	0.125	No Hit
CCTCATTACGAGCTTGTACACATGCTTCTAGAGCTACTCGATTAGCAACGGC	5	0.125	No Hit
GTCCGCGACCCCTGGATGCCGAAGGCGTCCTTGGGGCGATCTCGTAGTTCCT	5	0.125	No Hit
CCTCTGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTGGCCCGCAGCAGT	5	0.125	No Hit
CTCTGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTGGCCCGCAGCAGTA	5	0.125	No Hit
>>END_MODULE
>>Adapter Content	pass
#Position	Illumina Universal Adapter	Illumina Small RNA 3' Adapter	Illumina Small RNA 5' Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
1	0.0	0.0	0.0	0.0	0.0
2	0.0	0.0	0.0	0.0	0.0
3	0.0	0.0	0.0	0.0	0.0
4	0.0	0.0	0.0	0.0	0.0
5	0.0	0.0	0.0	0.0	0.0
6	0.0	0.0	0.0	0.0	0.0
7	0.0	0.0	0.0	0.0	0.0
8	0.025	0.0	0.0	0.0	0.0
9	0.025	0.0	0.0	0.0	0.0
10	0.025	0.0	0.0	0.0	0.0
11	0.025	0.0	0.0	0.0	0.0
12	0.025	0.0	0.0	0.0	0.0
13	0.025	0.0	0.0	0.0	0.0
14	0.025	0.0	0.0	0.0	0.0
15	0.025	0.0	0.0	0.0	0.0
16	0.025	0.0	0.0	0.0	0.0
17	0.025	0.0	0.0	0.0	0.0
18	0.025	0.0	0.0	0.0	0.0
19	0.025	0.0	0.0	0.0	0.0
20	0.025	0.0	0.0	0.0	0.0
21	0.025	0.0	0.0	0.0	0.0
22	0.025	0.0	0.0	0.0	0.0
23	0.025	0.0	0.0	0.0	0.0
24	0.025	0.0	0.0	0.0	0.0
25	0.025	0.0	0.0	0.0	0.0
26	0.025	0.0	0.0	0.0	0.0
27	0.025	0.0	0.0	0.0	0.0
28	0.025	0.0	0.0	0.0	0.0
29	0.025	0.0	0.0	0.0	0.0
30	0.025	0.0	0.0	0.0	0.0
31	0.025	0.0	0.0	0.0	0.0
32	0.025	0.0	0.0	0.0	0.0
33	0.025	0.0	0.0	0.0	0.0
34	0.025	0.0	0.0	0.0	0.0
35	0.025	0.0	0.0	0.0	0.0
36	0.025	0.0	0.0	0.0	0.0
37	0.025	0.0	0.0	0.0	0.0
38	0.025	0.0	0.0	0.0	0.0
39	0.025	0.0	0.0	0.0	0.0
40	0.025	0.0	0.0	0.0	0.0
>>END_MODULE
>>Kmer Content	pass
>>END_MODULE
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161005 spots for SRR5423435.sra
Written 161005 spots for SRR5423435.sra
Read 161008 spots for SRR5423435.sra
Written 161008 spots for SRR5423435.sra
SRR ids: ['SRR5423435.sra']
extra args: ['--split-files', '--defline-qual', '+']
tempdir: /tmp/pfd_wdfzrfx0
SRR5423435.sra spots: 3220103
blocks: [[1, 161005], [161006, 322010], [322011, 483015], [483016, 644020], [644021, 805025], [805026, 966030], [966031, 1127035], [1127036, 1288040], [1288041, 1449045], [1449046, 1610050], [1610051, 1771055], [1771056, 1932060], [1932061, 2093065], [2093066, 2254070], [2254071, 2415075], [2415076, 2576080], [2576081, 2737085], [2737086, 2898090], [2898091, 3059095], [3059096, 3220103]]
SRR5423435 file size 566457
SRR5423435 completed basic pipeline successfully
skewer v0.2.2 [April 4, 2016]
COMMAND LINE:	skewer -f sanger -l 18 -q 10 -k inf -t 20 -o SRR5423435 SRR5423435_1.fastq
Input file:	SRR5423435_1.fastq
trimmed:	SRR5423435-trimmed.fastq

Parameters used:
-- 3' end adapter sequence (-x):	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
-- maximum error ratio allowed (-r):	0.100
-- maximum indel error ratio allowed (-d):	0.030
-- end quality threshold (-q):		10
-- minimum read length allowed after trimming (-l):	18
-- file format (-f):		Sanger/Illumina 1.8+ FASTQ 
-- minimum overlap length for adapter detection (-k):	inf
-- number of concurrent threads (-t):	20
Wed Feb 12 11:57:17 2025 >> started

Wed Feb 12 11:57:20 2025 >> done (2.484s)
3220103 reads processed; of these:
    118 ( 0.00%) short reads filtered out after trimming by size control
     68 ( 0.00%) empty reads filtered out after trimming by size control
3219917 (99.99%) reads available; of these:
  67606 ( 2.10%) trimmed reads available after processing
3152311 (97.90%) untrimmed reads available after processing

Length distribution of reads after trimming:
length	count	percentage
 18	     12	  0.00%
 19	      5	  0.00%
 20	      3	  0.00%
 21	      0	  0.00%
 22	      0	  0.00%
 23	      0	  0.00%
 24	      0	  0.00%
 25	      3	  0.00%
 26	      2	  0.00%
 27	      1	  0.00%
 28	      2	  0.00%
 29	      4	  0.00%
 30	      1	  0.00%
 31	      2	  0.00%
 32	      4	  0.00%
 33	      7	  0.00%
 34	      8	  0.00%
 35	      5	  0.00%
 36	     10	  0.00%
 37	     14	  0.00%
 38	     14	  0.00%
 39	     24	  0.00%
 40	     22	  0.00%
 41	     40	  0.00%
 42	     49	  0.00%
 43	     73	  0.00%
 44	    113	  0.00%
 45	    176	  0.01%
 46	    291	  0.01%
 47	    446	  0.01%
 48	    986	  0.03%
 49	   2248	  0.07%
 50	   7705	  0.24%
 51	  55336	  1.72%
 52	3152311	 97.90%
3219917 reads passed initial QC


criterion=sequence-density
sequence-density=0.46
sequence-density-rank=1
fanout-score=2.00
fanout-score-rank=28
prefix-density=0.46
prefix-fanout=2.0
sequence=TGCTTAATGACCGCATGTGCAGGTAGTGCAAGTGCAGCCAGTACCGCAGTTGCACTTGCCATCGTTCTCAGCTGCTGGCACCTCCATGAC


criterion=fanout-score
sequence-density=0.01
sequence-density-rank=28
fanout-score=26.30
fanout-score-rank=1
prefix-density=0.31
prefix-fanout=1.2
sequence=CATTTTATTTCTATCTTTCCATACATAACCAAAAAATGGAAAAGATTCTTCAAGAGTCTCGGGTCCTAGAAGTGCATGATAAATACCGCCAAAGCCCAATACTGCAGAGGAAATTAAGTGAAGTACGCCAGATACAAAGTATGGAAAGGTGTCTATGACTTCCCCGCCAGGACCCACCCCCCAACCTAGAGTAGCTAGGTGGGGAAGTAAAATTAATCCTTGTTCATACATTGGCTTCTCCGGTACGAAATGGGCCACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTAATCCAGCATGGGCTACATGAGCTCCCAGCAG
                                 Started job on |	Feb 12 11:57:34
                             Started mapping on |	Feb 12 11:57:34
                                    Finished on |	Feb 12 11:57:39
       Mapping speed, Million of reads per hour |	2318.34

                          Number of input reads |	3219917
                      Average input read length |	51
                                    UNIQUE READS:
                   Uniquely mapped reads number |	2516631
                        Uniquely mapped reads % |	78.16%
                          Average mapped length |	51.79
                       Number of splices: Total |	229074
            Number of splices: Annotated (sjdb) |	225397
                       Number of splices: GT/AG |	223876
                       Number of splices: GC/AG |	4177
                       Number of splices: AT/AC |	632
               Number of splices: Non-canonical |	389
                      Mismatch rate per base, % |	0.46%
                         Deletion rate per base |	0.01%
                        Deletion average length |	2.22
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.35
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	578607
             % of reads mapped to multiple loci |	17.97%
        Number of reads mapped to too many loci |	68429
             % of reads mapped to too many loci |	2.13%
                                  UNMAPPED READS:
       % of reads unmapped: too many mismatches |	0.00%
                 % of reads unmapped: too short |	1.73%
                     % of reads unmapped: other |	0.01%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%
N_unmapped	124679	124679	124679
N_multimapping	578607	578607	578607
N_noFeature	319899	2480665	346978
N_ambiguous	17495	140	8477
UnstrandedReadsAssigned:2179237 PositiveStrandReadsAssigned:35826 NegativeStrandReadsAssigned:2161176
Dataset is classified negative stranded
MeadianReadLen=52 20thPercentileLength=52 echo kmer=47
SRR5423435 Starting Kallisto single end mapping to ensembl reference transcriptome. kmer=31

[quant] fragment length distribution is truncated gaussian with mean = 100, sd = 20
[index] k-mer length: 31
[index] number of targets: 52,400
[index] number of k-mers: 62,057,036
[index] number of equivalence classes: 130,681
[quant] running in single-end mode
[quant] will process file 1: SRR5423435-trimmed.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 3,219,917 reads, 2,614,233 reads pseudoaligned
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,075 rounds

  52401 SRR5423435.ke.tsv
  34699 SRR5423435.se.tsv
  87100 total
==> SRR5423435.ke.tsv <==
target_id	length	eff_length	est_counts	tpm
Potri.005G200100.1.v4.1	2018	1919	120	21.8955
Potri.005G024800.1.v4.1	1035	936	8	2.99269
Potri.004G059700.1.v4.1	961	862	4	1.6248
Potri.007G009000.2.v4.1	1416	1317	0	0
Potri.003G141000.2.v4.1	2943	2844	55	6.77144
Potri.016G087400.1.v4.1	270	171	20	40.9526
Potri.015G069301.1.v4.1	564	465	0	0
Potri.010G195200.1.v4.1	1773	1674	1	0.209167
Potri.012G127500.1.v4.1	977	878	3	1.19639

==> SRR5423435.se.tsv <==
Potri.001G166300.v4.1	0
Potri.001G448400.v4.1	1
Potri.001G233950.v4.1	0
Potri.001G122700.v4.1	15
Potri.001G212900.v4.1	4
Potri.001G182400.v4.1	0
Potri.001G256600.v4.1	0
Potri.001G040500.v4.1	0
Potri.001G416900.v4.1	0
Potri.001G452600.v4.1	2
SRR5423435 completed mapping pipeline successfully
