Tutorials

Video tutorials

• Use the DEE2 web app to search and retrieve data

• Analysing DEE2 data in the browser with Degust

• Using the On-demand data request service

Text-based tutorials

• Working with bulk transcriptome data files

  A tutorial for working with DEE2's HDF5 files is currently on the GenomeSpot blog.

• Accessing DEE2 data with the getDEE2 package

  Bioconductor vignette tutorial.

• Analysing DEE2 data in R Markdown

  DEE2 provides a quick way to access processed gene expression data. This R Markdown report demonstrates how to fetch expression data and downstream differential expression analysis.