Bulk data@DEE2

Bulk data are now available via http from this link.

The data are in 'long format' tables with the columns: 'dataset', 'gene', 'count'. Long tables are prefered for loading into databases as compared to wide matrix format. STAR counts have the prefix 'se.tsv.bz2' while kallisto estimated counts have the 'ke.tsv.bz2' prefix.

QC metrics are also available in long table format with the columns 'dataset','QC metric type', 'QC metric result'.


Data processsing is still underway so some datasets may be missing. Contact us if you would like specific data added, or alternatively spin up your own docker according to the guide.